Browse Element(s) Details


OsAffx.25966.1.S1_at

Description tigr:9632.m00950
TID=OsAffx.25966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1076011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10720NANA4+5806482..5807662retrotransposon protein, putative, unclassified
LOC_Os04g10724Os.52702.1.S1_at3/114+5808650..5809720hypothetical protein
LOC_Os04g10730Os.40360.1.S1_x_at1/114+5810725..5813044hypothetical protein
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25966.1.S1_at--756--3951Chr04:5830938..5830962 (25 bp)
CGGAGCGGCAGTGACGGATGGCGGC
LOC_Os04g10760
OsAffx.25966.1.S1_at--976--6251Chr04:5830912..5830936 (25 bp)
GATGTGGACGGAGCCCGAGAGCGGT
LOC_Os04g10760
OsAffx.25966.1.S1_at--834--8011Chr04:5830881..5830905 (25 bp)
GGCGGATGGATTGGGACGGAGCCCA
LOC_Os04g10760
OsAffx.25966.1.S1_at--290--8031Chr04:5830747..5830771 (25 bp)
GGAGGGCTCGGCATGGCTCTTCACC
LOC_Os04g10760
OsAffx.25966.1.S1_at--795--2631Chr04:5830669..5830693 (25 bp)
AACCTTCACGCGTGCAGTGGCCGTG
LOC_Os04g10760
OsAffx.25966.1.S1_at--168--8431Chr04:5830651..5830675 (25 bp)
GGCCGTGGCCACGTTGTCGTCGAAC
LOC_Os04g10760
OsAffx.25966.1.S1_at--764--8451Chr04:5830646..5830670 (25 bp)
TGGCCACGTTGTCGTCGAACCTGAT
LOC_Os04g10760
OsAffx.25966.1.S1_at--565--1892Chr04:5830641..5830665 (25 bp)
ACGTTGTCGTCGAACCTGATGGCGC
LOC_Os04g10760
OsAffx.25966.1.S1_at--603--8411Chr04:5830616..5830640 (25 bp)
GGCCGAATTCGTCGTCACCGTCTTG
LOC_Os04g10760
OsAffx.25966.1.S1_at--413--4711Chr04:5830577..5830601 (25 bp)
GCGGCCGCCGAGCTCAGAGATGGAG
LOC_Os04g10760
OsAffx.25966.1.S1_at--150--2791Chr04:5830467..5830491 (25 bp)
AAGAGGGCGGAGTCCATGCGGCGGT
LOC_Os04g10760
Target Sequence 
CGGAGCGGCAGTGACGGATGGCGGCGGATGTGGACGGAGCCCGAGAGCGGTGGCGGCGGCGGATGGATTGGGACGGAGCC
CAAGCGGCGGCGGCGGATGGCGGTGACGGATGGGGATGGAGCTCGAGTGGAGGCGGCAGATGGGGGCGGAGCCCATGCGG
CGGTGGTGGATGCCGGCAGCGGATGGGGGAGGGAGGGCTCGGCATGGCTCTTCACCGTCTCGGCCACAAGCCTCGTTCCG
CCGCTGCCATCCTCACGCTCCCGGAACTCAACCTTCACGCGTGCAGTGGCCGTGGCCACGTTGTCGTCGAACCTGATGGC
GCGGCCGAATTCGTCGTCACCGTCTTGCCGAGCACCGCGGCGCGGCCGCCGAGCTCAGAGATGGAGCGGCGGCGACGGAT
TAGGATGGAGCCGGAGCGGCAGCGGCGCATGGCGGCGATGGATGGGGATGGAGCCTGAGCGGAGGCGGTGGAAGAGGGCG
GAGTCCATGCGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis