Browse Element(s) Details


OsAffx.25968.1.S1_at

Description tigr:9632.m00953
TID=OsAffx.25968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g107909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25968.1.S1_at--953--10011Chr04:5842012..5842036 (25 bp)
TAGAGCTGCTCGGTTATTCCTTCGG
LOC_Os04g10790
OsAffx.25968.1.S1_at--486--91Chr04:5841997..5842021 (25 bp)
ATTCCTTCGGCCATGGAAGATGCGA
LOC_Os04g10790
OsAffx.25968.1.S1_at--458--8391NONE
GGCGAAATCATCGAGGGACCAGGAT
NONE
OsAffx.25968.1.S1_at--287--8091NONE
GGACCAGGATCGTTTGGCAAAATCT
NONE
OsAffx.25968.1.S1_at--433--3073Chr08:22408866..22408890 (25 bp)
AATCTTGGTAGAGGGTACTCTCACC
NONE
OsAffx.25968.1.S1_at--197--7011Chr04:5841274..5841298 (25 bp)
GTACTCTCACCATCTACATAGCATA
LOC_Os04g10790
OsAffx.25968.1.S1_at--821--291Chr04:5841140..5841281 (25 bp)
ATAGCATACGGTATTTTCTGCAAGC
LOC_Os04g10790
OsAffx.25968.1.S1_at--480--10211Chr04:5841129..5841153 (25 bp)
TATTTTCTGCAAGCAAGCTCAGGCA
LOC_Os04g10790
OsAffx.25968.1.S1_at--737--9632Chr08:22409043..22409067 (25 bp)
TCAGGCAGCCCTCAGGCATGGAAAA
NONE
OsAffx.25968.1.S1_at--713--8512Chr09:3717776..3717800 (25 bp)
TGGAAAATACTCAGGCAGGTTGCTC
NONE
OsAffx.25968.1.S1_at--1131--90713Chr10:3446229..3446253 (25 bp)
TGCTCAGGGTAGCAACCAAACAGGC
NONE
Target Sequence 
TAGAGCTGCTCGGTTATTCCTTCGGCCATGGAAGATGCGAGGTGGAGGCGGAGGGAAGAGGAGCCGGGAGATCGCGATCG
AGCGGCCGTGGAGGCGAAATCATCGAGGGACCAGGATCGTTTGGCAAAATCTTGGTAGAGGGTACTCTCACCATCTACAT
AGCATACGGTATTTTCTGCAAGCAAGCTCAGGCAGCCCTCAGGCATGGAAAATACTCAGGCAGGTTGCTCAGGGTAGCAA
CCAAACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis