Browse Element(s) Details


OsAffx.25969.1.S1_at

Description tigr:9632.m00957
TID=OsAffx.25969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1083010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10860OsAffx.24317.6.S1_x_at7/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10860OsAffx.12663.1.S1_at1/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10870OsAffx.25970.2.S1_s_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_x_at9/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.1.S1_at3/114+5874430..5876117hypothetical protein
LOC_Os04g10880OsAffx.21755.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880OsAffx.10222.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880Os.45902.1.A1_x_at1/114+5879059..5882459hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25969.1.S1_at--807--1891Chr04:5856591..5856615 (25 bp)
ACGTCTATGAACAAAGGCGGTGGCT
LOC_Os04g10830
OsAffx.25969.1.S1_at--831--4671Chr04:5856575..5856599 (25 bp)
GCGGTGGCTGGCAACACGTCAAGAT
LOC_Os04g10830
OsAffx.25969.1.S1_at--417--3231Chr04:5856556..5856580 (25 bp)
CAAGATGGCGAACTGCGGCATGCTT
LOC_Os04g10830
OsAffx.25969.1.S1_at--808--3931Chr04:5856541..5856565 (25 bp)
CGGCATGCTTCACGTTGTCAATTGA
LOC_Os04g10830
OsAffx.25969.1.S1_at--1084--7071Chr04:5856525..5856549 (25 bp)
GTCAATTGACTGAGCACATGGCAGA
LOC_Os04g10830
OsAffx.25969.1.S1_at--243--2971Chr04:5856082..5856106 (25 bp)
AATGGCAGTGACACGCCACCCGAGT
LOC_Os04g10830
OsAffx.25969.1.S1_at--392--4811Chr04:5856051..5856075 (25 bp)
GCTCTCCAGAGACCACATCTAGTGA
LOC_Os04g10830
OsAffx.25969.1.S1_at--167--3251Chr04:5856023..5856047 (25 bp)
CAAGCTCAGGGTGGCCGGATCCAGC
LOC_Os04g10830
OsAffx.25969.1.S1_at--951--1551Chr04:5855997..5856021 (25 bp)
AGCTTTCATCCATATCTGAAGTGAA
LOC_Os04g10830
OsAffx.25969.1.S1_at--855--5811Chr04:5855893..5855917 (25 bp)
GACCCCTCTCGTCAACGGATGGGAG
LOC_Os04g10830
OsAffx.25969.1.S1_at--106--2951NONE
AAGGCTGGGCCAAGCCAGATGTAAA
NONE
Target Sequence 
ACGTCTATGAACAAAGGCGGTGGCTGGCAACACGTCAAGATGGCGAACTGCGGCATGCTTCACGTTGTCAATTGACTGAG
CACATGGCAGAGGTGGGGAGAGAGGTGTTGAAGGAGATGGCCGAAGGGAAAAGGAAAGGAGGGCCAACCTCCCGTGGAGG
CAATGGCAGTGACACGCCACCCGAGTGCGACCGCTCTCCAGAGACCACATCTAGTGAGGGCAAGCTCAGGGTGGCCGGAT
CCAGCGAGCTTTCATCCATATCTGAAGTGAAGGGCAGCTCACCATCCTCACTGCCTCCGTGGCCCCTCTCTTCGGTGGAG
AGGGGAGCTTGCTGTCCTCGCTCCCATCATGACCCCTCTCGTCAACGGATGGGAGGAGAGGGTGCACAGGGAGGAGAGGA
GGCGGGAACAAGTGGCGGTGGTGATCTGAAGAAGGGGATCGGTGGAGAAGGCTGGGCCAAGCCAGATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis