Browse Element(s) Details


OsAffx.13760.1.S1_at

Description tigr:9632.m00954
TID=OsAffx.13760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphate transporter HvPT2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1080011/11major facilitator superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10860OsAffx.24317.6.S1_x_at7/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10860OsAffx.12663.1.S1_at1/114+5870695..5873243transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13760.1.S1_at--984--10031Chr04:5847595..5847619 (25 bp)
TAGATAGCGAATACCACCATACCCT
LOC_Os04g10800
OsAffx.13760.1.S1_at--927--9691Chr04:5847647..5847671 (25 bp)
TCACACATTTATCTCGCTTTGCGGT
LOC_Os04g10800
OsAffx.13760.1.S1_at--1148--8411Chr04:5847717..5847741 (25 bp)
GGCCGTGTCAAGATCCAGCTGATTG
LOC_Os04g10800
OsAffx.13760.1.S1_at--662--5191Chr04:5847777..5847801 (25 bp)
GCAATTCCTTATGATCAGTGGCTGA
LOC_Os04g10800
OsAffx.13760.1.S1_at--312--10731Chr04:5847823..5847847 (25 bp)
TTGCAGTCATGTATGGCCTGACCTT
LOC_Os04g10800
OsAffx.13760.1.S1_at--656--8631Chr04:5847863..5847887 (25 bp)
TGGGCCAAATACTACAACCTTCATA
LOC_Os04g10800
OsAffx.13760.1.S1_at--413--91Chr04:5847888..5847912 (25 bp)
ATTCCAGCTGAGATTTTCCCTGCAA
LOC_Os04g10800
OsAffx.13760.1.S1_at--480--2931Chr04:5847911..5847935 (25 bp)
AAGGCTACGGTCCACATGCCATGGG
LOC_Os04g10800
OsAffx.13760.1.S1_at--210--10611Chr04:5848015..5848039 (25 bp)
TTCTGTTTGTCCTTATTGGGTGCAA
LOC_Os04g10800
OsAffx.13760.1.S1_at--462--431Chr04:5848039..5848063 (25 bp)
ATCTTGTTGGATTCATCTTCACCCT
LOC_Os04g10800
OsAffx.13760.1.S1_at--1104--2871Chr04:5848081..5848105 (25 bp)
AAGGGAAGTCCCTCGAGGATCTCAC
LOC_Os04g10800
Target Sequence 
TAGATAGCGAATACCACCATACCCTCCAGCGGATGATCACCATGACAGCAGTTCACACATTTATCTCGCTTTGCGGTGCA
CTTCCCGGGTACTTCTTCACTGTCGCCTTCGTTGATCGCATCGGCCGTGTCAAGATCCAGCTGATTGGATTCACCATGAT
GACTGTTTTCATGCTTTGTCTTGCAATTCCTTATGATCAGTGGCTGAGGCACAAGAACAAGTACGGATTTGCAGTCATGT
ATGGCCTGACCTTCTTCTTCGCCAACTTTGGGCCAAATACTACAACCTTCATAATTCCAGCTGAGATTTTCCCTGCAAGG
CTACGGTCCACATGCCATGGGATATCTGGTGCGGTTGGGAAGATCGGTGCGATTGTCGGTGTGTTTGGTTTCTTGTACAC
AGAATACCATATCAGGATCTTTCTGTTTGTCCTTATTGGGTGCAATCTTGTTGGATTCATCTTCACCCTTCTCTTACCAG
AGTCGAAAGGGAAGTCCCTCGAGGATCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis