Browse Element(s) Details


Os.1625.1.S1_at

Description gb:AK108438.1
DB_XREF= gi:32993647
TID=Os.1625.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.23 (P0019D06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B08, full insert sequence.
FL= gb:AK108438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0501011/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04980NANA1+2333726..2336866transposon protein, putative, unclassified
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed
LOC_Os01g05000OsAffx.1934.1.S1_at11/111+2352985..2353847hypothetical protein
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1625.1.S1_at--820--3051Chr01:2355297..2355321 (25 bp)
AATCTAGCATTCCTCTAACTGTCAC
LOC_Os01g05010
Os.1625.1.S1_at--425--9811Chr01:2355282..2355306 (25 bp)
TAACTGTCACCATCTCGAAGGGAGA
LOC_Os01g05010
Os.1625.1.S1_at--849--5851Chr01:2355252..2355276 (25 bp)
GACCAAGCCTTGAATTCATCTGCAC
LOC_Os01g05010
Os.1625.1.S1_at--530--471Chr01:2355235..2355259 (25 bp)
ATCTGCACTGCCTATCCTGATGAGA
LOC_Os01g05010
Os.1625.1.S1_at--873--691Chr01:2355216..2355240 (25 bp)
ATGAGATCCTCATCGATGCCTTGTC
LOC_Os01g05010
Os.1625.1.S1_at--731--591Chr01:2355201..2355225 (25 bp)
ATGCCTTGTCTGTGATGCCATCAGA
LOC_Os01g05010
Os.1625.1.S1_at--400--1171Chr01:2354987..2355011 (25 bp)
AGTACCTGGAGATGCGCGGGATTAC
LOC_Os01g05010
Os.1625.1.S1_at--540--8451Chr01:2354957..2354981 (25 bp)
TGGCCACAAACTTCCTACACGAGTA
LOC_Os01g05010
Os.1625.1.S1_at--202--8131Chr01:2354920..2354944 (25 bp)
GGACAGCCGAGAATACCTCATCTGG
LOC_Os01g05010
Os.1625.1.S1_at--489--2471Chr01:2354857..2354881 (25 bp)
AACACAATCATTTCCTTGCCATAAG
LOC_Os01g05010
Os.1625.1.S1_at--830--7351Chr01:2354816..2354840 (25 bp)
GTGAACCGCTCCTTTCTATAAGTAT
LOC_Os01g05010
Target Sequence 
AATCTAGCATTCCTCTAACTGTCACCATCTCGAAGGGAGAAGAGGGACCAAGCCTTGAATTCATCTGCACTGCCTATCCT
GATGAGATCCTCATCGATGCCTTGTCTGTGATGCCATCAGAGAGTGGGGAAGATGAAATGATCACGTATGAGGGNCCTGA
TTTCAATGACCTTGATGAAAACCTGCAAAGGGCATTCCACAAGTACCTGGAGATGCGCGGGATTACGCCCNATGGCCACA
AACTTCCTACACGAGTACATGATCAACAAGGACAGCCGAGAATACCTCATCTGGCTGAGGCGGCTGAAGGATTTTGTTAG
GAATTAATGATTAACACAATCATTTCCTTGCCATAAGATTAGTTTTGAGGGCTGTGAACCGCTCCTTTCTATAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis