Browse Element(s) Details


OsAffx.23164.1.S1_at

Description tigr:9629.m00814
TID=OsAffx.23164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g087108/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08740OsAffx.10971.1.S1_at2/111+4365540..4366067hypothetical protein
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23164.1.S1_at--863--4171NONE
CCCAGCACCCAAGGGCTTTTGAACT
NONE
OsAffx.23164.1.S1_at--631--5071NONE
GCACCCAAGGGCTTTTGAACTGCCA
NONE
OsAffx.23164.1.S1_at--1069--3331Chr01:4351759..4352192 (25 bp)
CACCCAAGGGCTTTTGAACTGCCAT
LOC_Os01g08710
OsAffx.23164.1.S1_at--567--1811Chr01:4351758..4352191 (25 bp)
ACCCAAGGGCTTTTGAACTGCCATT
LOC_Os01g08710
OsAffx.23164.1.S1_at--827--4171Chr01:4351757..4351777 (21 bp)
CCCAAGGGCTTTTGAACTGCCATTC
LOC_Os01g08710
OsAffx.23164.1.S1_at--264--4371Chr01:4351756..4351777 (22 bp)
CCAAGGGCTTTTGAACTGCCATTCT
LOC_Os01g08710
OsAffx.23164.1.S1_at--1033--3211NONE
CAAGGGCTTTTGAACTGCCATTCTT
NONE
OsAffx.23164.1.S1_at--1017--2871Chr01:4351754..4351777 (24 bp)
AAGGGCTTTTGAACTGCCATTCTTC
LOC_Os01g08710
OsAffx.23164.1.S1_at--1031--1071Chr01:4351753..4351777 (25 bp)
AGGGCTTTTGAACTGCCATTCTTCC
LOC_Os01g08710
OsAffx.23164.1.S1_at--517--7571Chr01:4351752..4351776 (25 bp)
GGGCTTTTGAACTGCCATTCTTCCC
LOC_Os01g08710
OsAffx.23164.1.S1_at--928--8291Chr01:4351751..4351775 (25 bp)
GGCTTTTGAACTGCCATTCTTCCCA
LOC_Os01g08710
Target Sequence
CCCAGCACCCAAGGGCTTTTGAACTGCCATTCTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis