Browse Element(s) Details


OsAffx.23229.1.S1_at

Description tigr:9629.m01362
TID=OsAffx.23229.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1385011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23229.1.S1_at--889--8251Chr01:7763984..7764008 (25 bp)
GGCACCACCACATTGTCGTGCCGGT
LOC_Os01g13850
OsAffx.23229.1.S1_at--632--1691Chr01:7763990..7764014 (25 bp)
ACCACATTGTCGTGCCGGTCACCGT
LOC_Os01g13850
OsAffx.23229.1.S1_at--631--1071Chr01:7764130..7764154 (25 bp)
AGGGACGCCTACTGCGCGAGCTGCC
LOC_Os01g13850
OsAffx.23229.1.S1_at--58--9171Chr01:7764142..7764166 (25 bp)
TGCGCGAGCTGCCAGGTCGCCTTCT
LOC_Os01g13850
OsAffx.23229.1.S1_at--851--1771Chr01:7764230..7764254 (25 bp)
ACTCCGTCCTCCGAATCGAGGAGGG
LOC_Os01g13850
OsAffx.23229.1.S1_at--471--9371Chr01:7764277..7764301 (25 bp)
TCGACGGGCTCCGATTGGTGGCTCC
LOC_Os01g13850
OsAffx.23229.1.S1_at--615--4031Chr01:7764288..7764312 (25 bp)
CGATTGGTGGCTCCCTTACCTGGAG
LOC_Os01g13850
OsAffx.23229.1.S1_at--241--8011Chr01:7764357..7764381 (25 bp)
GGAGTACTACGAGCTACTGCCGATA
LOC_Os01g13850
OsAffx.23229.1.S1_at--1077--4071Chr01:7764366..7764390 (25 bp)
CGAGCTACTGCCGATACTGACGAGG
LOC_Os01g13850
OsAffx.23229.1.S1_at--753--3811Chr01:7764373..7764397 (25 bp)
CTGCCGATACTGACGAGGCCGCCGG
LOC_Os01g13850
OsAffx.23229.1.S1_at--834--231Chr01:7764422..7764446 (25 bp)
ATATCGGAATCCAGCACTCCTCACA
LOC_Os01g13850
Target Sequence 
GGCACCACCACATTGTCGTGCCGGTCACCGTCGACGCCGCCACCGGCCGGCCAACCTTCCAAAACCGCGACGCGGAGGGG
CACAGGATGTTCCCGCGCGTCATCGCCGACGCCATCGTCTCGCACGACTACGCCACGCGGCTCCCCAGGGACGCCTACTG
CGCGAGCTGCCAGGTCGCCTTCTGCGCCGCCTCCTGCCACCACCACTACGACCACCACCGGAACGGCGACGACGACCCGG
TCCCCGACTCCGTCCTCCGAATCGAGGAGGGCGGCGGGCGGCGCTGCGTGCGGTCGACGGGCTCCGATTGGTGGCTCCCT
TACCTGGAGAGCGTCCTCGGCGACCCGGTGCACGAGGGCGAGGACGAGCGCGGGGAGTACTACGAGCTACTGCCGATACT
GACGAGGCCGCCGGGCGGCTGCGCGCACTGCCGCCGCCATATCGGAATCCAGCACTCCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis