Browse Element(s) Details


OsAffx.11040.1.S1_at

Description tigr:9629.m01368
TID=OsAffx.11040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1391010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein
LOC_Os01g13940Os.43343.1.S1_at11/111+7803915..7807660expressed protein
LOC_Os01g13950Os.31185.1.S1_at10/111+7814506..7815196Glutaredoxin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11040.1.S1_at--350--6431Chr01:7790529..7790553 (25 bp)
GATCATTGCATCATCACGGAAGCTG
LOC_Os01g13910
OsAffx.11040.1.S1_at--406--6971Chr01:7790555..7790579 (25 bp)
GTAGCCTCATTATCGTGGAGTGCAA
LOC_Os01g13910
OsAffx.11040.1.S1_at--14--8551Chr01:7790570..7790594 (25 bp)
TGGAGTGCAACAACGTCCGCGGCGT
LOC_Os01g13910
OsAffx.11040.1.S1_at--292--8751Chr01:7790794..7790893 (25 bp)
TGTAGCAATACCCTTCAGGTCGTGT
LOC_Os01g13910
OsAffx.11040.1.S1_at--32--9651NONE
TCAGGTCGTGTCTTTCTTGCGGCAT
NONE
OsAffx.11040.1.S1_at--628--4691Chr01:7790901..7790925 (25 bp)
GCGGCATCCTGGAGCGAATCTTGAT
LOC_Os01g13910
OsAffx.11040.1.S1_at--368--5251Chr01:7790916..7790940 (25 bp)
GAATCTTGATATGGCCATCCTCGAT
LOC_Os01g13910
OsAffx.11040.1.S1_at--470--9451Chr01:7790999..7791023 (25 bp)
TCGGCAACATCTTTGTGTTCCTCAA
LOC_Os01g13910
OsAffx.11040.1.S1_at--177--9731Chr01:7791020..7791044 (25 bp)
TCAAGAGTTGTCATCGCCCTAATCT
LOC_Os01g13910
OsAffx.11040.1.S1_at--269--2831Chr01:7791049..7791073 (25 bp)
AAGTTCCTTGTGACGGTTGATACCA
LOC_Os01g13910
OsAffx.11040.1.S1_at--630--9731Chr01:7791098..7791196 (25 bp)
TAATTTTTCAGCGATCGGACCGAAC
LOC_Os01g13910
Target Sequence 
GATCATTGCATCATCACGGAAGCTGAGTAGCCTCATTATCGTGGAGTGCAACAACGTCCGCGGCGTGGTCGTCATGCCGG
ATTCTCCCCTCCACAACTTCCATTGCATGGGGAGCCCCCTTTCGCCGTTCAACCTCTCCGGCGGCGCCCGCTTGCTTACC
GACCTCCTCTTCTGCTTCAATCCCCCGATACTTGGTCATCAAGTGTTGAGAGAATGGTTCAGGAACAATCTACCTTTTCT
CTCCAACATCACCTCCCTCTCCATCTGTAGCAATACCCTTCAGGTCGTGTCTTTCTTGCGGCATCCTGGAGCGAATCTTG
ATATGGCCATCCTCGATAACTTCCAGAGTCTGACAATGCTAGAATTAACCATGCTTGAATTCAAGGCCGTTGGCCTCGGC
AACATCTTTGTGTTCCTCAAGAGTTGTCATCGCCCTAATCTGAAGAAGTTCCTTGTGACGGTTGATACCAGCAAACCCAC
TCTGAATTGCATTTTAATTTTTCAGCGATCGGACCGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis