Browse Element(s) Details


OsAffx.22057.1.S1_at

Description gb:NM_188712.1
DB_XREF= gi:34904507
GEN=OSJNBa0010K01.17
TID=OsAffx.22057.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.17 (OSJNBa0010K01.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g139203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein
LOC_Os01g13940Os.43343.1.S1_at11/111+7803915..7807660expressed protein
LOC_Os01g13950Os.31185.1.S1_at10/111+7814506..7815196Glutaredoxin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22057.1.S1_at--98--5111Chr01:7793358..7793382 (25 bp)
GCACTGGCGGGAGTACTCTGGACCA
LOC_Os01g13920
OsAffx.22057.1.S1_at--1003--3771Chr01:7793343..7793367 (25 bp)
CTCTGGACCAGAGGAGTACGCGTGG
LOC_Os01g13920
OsAffx.22057.1.S1_at--983--2791Chr01:7793083..7793107 (25 bp)
AAGATGCAGGGCACATGCGCCTCCT
LOC_Os01g13920
OsAffx.22057.1.S1_at--313--611Chr01:7793069..7793093 (25 bp)
ATGCGCCTCCTGCTGGGCCTTTAGC
NONE
OsAffx.22057.1.S1_at--565--2551Chr01:7792901..7792984 (25 bp)
AACTGCGACCACACGCTATTGCTTG
NONE
OsAffx.22057.1.S1_at--555--2171Chr01:7792891..7792911 (21 bp)
ACACGCTATTGCTTGCCGTCCTCAT
NONE
OsAffx.22057.1.S1_at--909--10691Chr01:7792879..7792903 (25 bp)
TTGCCGTCCTCATCTTTGAACTAAT
NONE
OsAffx.22057.1.S1_at--647--431Chr01:7792868..7792892 (25 bp)
ATCTTTGAACTAATCGAGCTATTGC
NONE
OsAffx.22057.1.S1_at--922--3731Chr01:7792859..7792883 (25 bp)
CTAATCGAGCTATTGCAATGCAGAG
NONE
OsAffx.22057.1.S1_at--716--9951Chr01:7792789..7792813 (25 bp)
TACGCCTACCTAATGAGCTCGGGAA
NONE
OsAffx.22057.1.S1_at--60--4311Chr01:7792785..7792809 (25 bp)
CCTACCTAATGAGCTCGGGAAGGTT
NONE
Target Sequence 
GCACTGGCGGGAGTACTCTGGACCAGAGGAGTACGCGTGGCGGCTGCGCGTGTTCGCCGCCAACCTCACCCGCACCGCGG
CACACCAANNNNNNNNNNNNNNNNNNNNNNNNNNCATCACCCCTTCTCCGACCTCATCCGGGAAGAGTTCGAGGCGCGGT
TCACGGGCCTCGCTGCCAACGGCGACGACGAGGCGGCCGATGCCGGCCACGGAGGAGNNNNNNNNNNNNNNNNNNNNCTT
CGATTTGGCGCGACAGGGGCGCCGTGACCGACGTCAAGATGCAGGGCACATGCGCCTCCTGCTGGGCCTTTAGCACCACC
GGCGCCGTCGAGGGCGACAACTTCCTCGCCAGCGGCAACCTCCGCAACCTCCTCAACCTCAGCGAGCAGCAGCTCGTCAA
CTGCGACCACACGCTATTGCTTGCCGTCCTCATCTTTGAACTAATCGAGCTATTGCAATGCAGAGAAGAAGACGGAGTGC
GGCTGCGGCGGCGGGCTGATGACAAACGCCTACGCCTACCTAATGAGCTCGGGAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis