Browse Element(s) Details


Os.43343.1.S1_at

Description gb:NM_188715.1
DB_XREF= gi:34904513
GEN=OSJNBa0010K01.20
TID=Os.43343.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0010K01.20 (OSJNBa0010K01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.20 (OSJNBa0010K01.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein
LOC_Os01g13940Os.43343.1.S1_at11/111+7803915..7807660expressed protein
LOC_Os01g13950Os.31185.1.S1_at10/111+7814506..7815196Glutaredoxin-like family protein, expressed
LOC_Os01g13960NANA1+7820053..7824354hypothetical protein
LOC_Os01g13970OsAffx.20387.1.S1_x_at1/111+7825219..7829019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13980Os.21387.3.S1_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980OsAffx.18435.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.36736.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.21387.3.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43343.1.S1_at--438--10871Chr01:7804967..7804991 (25 bp)
TTGGACCGACAACTTGAGGGCCTGC
LOC_Os01g13940
Os.43343.1.S1_at--770--7551Chr01:7804950..7804974 (25 bp)
GGGCCTGCTGCTTATTTTGGGAGAC
LOC_Os01g13940
Os.43343.1.S1_at--699--5991Chr01:7804930..7804954 (25 bp)
GAGACTGTCTGAGTTCACTTATCTT
LOC_Os01g13940
Os.43343.1.S1_at--702--4731Chr01:7804876..7804900 (25 bp)
GCTGTCTAATAGTGGCTCAGTCCAT
LOC_Os01g13940
Os.43343.1.S1_at--423--1131Chr01:7804503..7804882 (25 bp)
AGTCCATTTCCCAGAGAGTCACAAT
LOC_Os01g13940
Os.43343.1.S1_at--427--6591Chr01:7804460..7804484 (25 bp)
GATTGTTGACTGTATCACTGGGACT
LOC_Os01g13940
Os.43343.1.S1_at--378--1951Chr01:7804444..7804468 (25 bp)
ACTGGGACTGATTACCGTAGCAAAT
LOC_Os01g13940
Os.43343.1.S1_at--289--6431Chr01:7804260..7804284 (25 bp)
GATCTTGAAGTCAGTCATGTCCATA
LOC_Os01g13940
Os.43343.1.S1_at--407--6591Chr01:7804220..7804244 (25 bp)
GATTGCAACTTTTTCAGTCTGTACG
LOC_Os01g13940
Os.43343.1.S1_at--422--4991Chr01:7804140..7804164 (25 bp)
GCATGCGATCATTAATTCTTGGCGT
LOC_Os01g13940
Os.43343.1.S1_at--526--10431Chr01:7804113..7804137 (25 bp)
TTATCTGCGGAATTGTTCAACCCAA
LOC_Os01g13940
Target Sequence 
TTGGACCGACAACTTGAGGGCCTGCTGCTTATTTTGGGAGACTGTCTGAGTTCACTTATCTTGTACTTCAATTCAAGTGA
ATGGGAAAGTAGCTGTCTAATAGTGGCTCAGTCCATTTCCCAGAGAGTCACAATGGACCTGAATTGTTTAAGGATTGTTG
ACTGTATCACTGGGACTGATTACCGTAGCAAATTCNTAANGGAGCCAGCTGGNCCTACAATTCCNCAAAGTTAGCNTTGG
CCTTAAGGTGGCAAATGTTGAGAAGATCTTGAAGTCAGTCATGTCCATAAATGTGAAGGATAAAGATTGCAACTTTTTCA
GTCTGTACGTATACCTAGTTTTGATGGATAACTTACTCTTCTCAAGTGATGCCTTTAGAGATAAGCATGCGATCATTAAT
TCTTGGCGTAATTATCTGCGGAATTGTTCAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis