Browse Element(s) Details


Os.31185.1.S1_at

Description gb:AK107708.1
DB_XREF= gi:32992917
TID=Os.31185.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0010K01.22 (OSJNBa0010K01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D06, full insert sequence.
FL= gb:AK107708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1395010/11Glutaredoxin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein
LOC_Os01g13940Os.43343.1.S1_at11/111+7803915..7807660expressed protein
LOC_Os01g13950Os.31185.1.S1_at10/111+7814506..7815196Glutaredoxin-like family protein, expressed
LOC_Os01g13960NANA1+7820053..7824354hypothetical protein
LOC_Os01g13970OsAffx.20387.1.S1_x_at1/111+7825219..7829019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13980Os.21387.3.S1_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980OsAffx.18435.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.36736.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.21387.3.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31185.1.S1_at--317--4051Chr01:7814922..7814946 (25 bp)
CGATCGGCTCATGGCCATGCACATG
LOC_Os01g13950
Os.31185.1.S1_at--371--1671Chr01:7814982..7815006 (25 bp)
AGCCCTGTGGCTCTGAGTTGATCTT
LOC_Os01g13950
Os.31185.1.S1_at--184--8331Chr01:7814990..7815014 (25 bp)
GGCTCTGAGTTGATCTTCGTCATTA
LOC_Os01g13950
Os.31185.1.S1_at--972--6411Chr01:7815001..7815025 (25 bp)
GATCTTCGTCATTAGCGATGAGAGA
LOC_Os01g13950
Os.31185.1.S1_at--204--271Chr01:7815049..7815073 (25 bp)
ATATGCATGTCCCTTTTGATCTTTT
LOC_Os01g13950
Os.31185.1.S1_at--224--1271Chr01:7815082..7815106 (25 bp)
AGATTTGTTTGTGCTTCGTTCTCGA
LOC_Os01g13950
Os.31185.1.S1_at--445--7331Chr01:7815092..7815116 (25 bp)
GTGCTTCGTTCTCGATACAATTCTA
LOC_Os01g13950
Os.31185.1.S1_at--624--3151Chr01:7815110..7815134 (25 bp)
AATTCTATCTTTAATTGCGTCGATC
LOC_Os01g13950
Os.31185.1.S1_at--1117--3151Chr01:7815122..7815146 (25 bp)
AATTGCGTCGATCATATGGAAACTT
LOC_Os01g13950
Os.31185.1.S1_at--333--831Chr01:7815137..7815161 (25 bp)
ATGGAAACTTCGAAACTTCAGAGAA
LOC_Os01g13950
Os.31185.1.S1_at--398--9731Chr01:7815176..7815197 (22 bp)
TCAAGAGATGTTCACAAGGTCAAAA
NONE
Target Sequence 
CGATCGGCTCATGGCCATGCACATGGCCGGCGAGCTCGTGCCGNNNTNGAAGCAGGCAGGAGCCCTGTGGCTCTGAGTTG
ATCTTCGTCATTAGCGATGAGAGAGAGAGAGTCATTAGGCTTAAAACATATGCATGTCCCTTTTGATCTTTTTTTAACTG
TAGATTTGTTTGTGCTTCGTTCTCGATACAATTCTATCTTTAATTGCGTCGATCATATGGAAACTTCGAAACTTCAGAGA
AACAGAGTTGATCAATCAAGAGATGTTCACAAGGTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis