Browse Element(s) Details


Os.43344.1.S1_at

Description gb:AK119763.1
DB_XREF= gi:37989386
TID=Os.43344.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0010K01.19 (OSJNBa0010K01.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G09, full insert sequence.
FL= gb:AK119763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1393011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein
LOC_Os01g13940Os.43343.1.S1_at11/111+7803915..7807660expressed protein
LOC_Os01g13950Os.31185.1.S1_at10/111+7814506..7815196Glutaredoxin-like family protein, expressed
LOC_Os01g13960NANA1+7820053..7824354hypothetical protein
LOC_Os01g13970OsAffx.20387.1.S1_x_at1/111+7825219..7829019retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43344.1.S1_at--713--1751Chr01:7802149..7802173 (25 bp)
ACCTGTCGGAGGCATGGTACCACGT
LOC_Os01g13930
Os.43344.1.S1_at--898--7531Chr01:7802283..7802307 (25 bp)
GTGGCGTGCAACGTCCGACAAGAGT
LOC_Os01g13930
Os.43344.1.S1_at--650--6471Chr01:7802322..7802346 (25 bp)
GATACATGGCGTCGACCGGACCAGA
LOC_Os01g13930
Os.43344.1.S1_at--826--8091Chr01:7802339..7802363 (25 bp)
GGACCAGACACACGATCACACGAGT
LOC_Os01g13930
Os.43344.1.S1_at--606--5391Chr01:7802390..7802414 (25 bp)
GAAGCACCAACTCGATGATACTACT
LOC_Os01g13930
Os.43344.1.S1_at--995--8891Chr01:7802429..7802453 (25 bp)
TGAGTTTTGTTACTTTCGCCTGCAA
LOC_Os01g13930
Os.43344.1.S1_at--50--10311Chr01:7802442..7802466 (25 bp)
TTTCGCCTGCAAATTCCATTCCAAT
LOC_Os01g13930
Os.43344.1.S1_at--1120--6131Chr01:7802471..7802495 (25 bp)
GAGGGTGATACTCCATCTAGGTAGA
LOC_Os01g13930
Os.43344.1.S1_at--306--1311Chr01:7802493..7802517 (25 bp)
AGATGTTCAGTGCTCTTCCCACCTT
LOC_Os01g13930
Os.43344.1.S1_at--405--6812Chr01:7802520..7802544 (25 bp)
GTTTTTCTTTATATATCCTCCTTTG
LOC_Os01g13930
Os.43344.1.S1_at--658--351Chr01:7802557..7802581 (25 bp)
ATAATATGGCGGCAACCGCCCTATT
LOC_Os01g13930
Target Sequence 
ACCTGTCGGAGGCATGGTACCACGTGCGGCGGCCGGCGCCCCGATCACCGGCGGCGGCGGCGATGAGGCTGCAGCAGGCG
GACGCGAGGTCGGCGGCGGAGATGAAGGACCAGCTTCGGATGTGGGCGCAGGCCGTGGCGTGCAACGTCCGACAAGAGTG
TTAAAATCGGATCGATACATGGCGTCGACCGGACCAGACACACGATCACACGAGTTTTTTTTTTTTTNACCGCGGAAACC
AGAAGCACCAACTCGATGATACTACTACCATTTCAGTAGTTGAGTTTTGTTACTTTCGCCTGCAAATTCCATTCCAATCC
AAGAGGGTGATACTCCATCTAGGTAGATGTTCAGTGCTCTTCCCACCTTTTGTTTTTCTTTATATATCCTCCTTTGGTTG
ATCTATGAATAATATGGCGGCAACCGCCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis