Browse Element(s) Details


OsAffx.23294.2.S1_at

Description tigr:9629.m01820
TID=OsAffx.23294.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18680OsAffx.22927.1.S1_x_at7/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18680OsAffx.8420.1.S1_x_at1/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18690NANA1+10538588..10540496retrotransposon protein, putative, unclassified
LOC_Os01g18700NANA1+10541749..10543926retrotransposon protein, putative, unclassified
LOC_Os01g18710OsAffx.23294.2.S1_at11/111+10546018..10547862hypothetical protein
LOC_Os01g18720OsAffx.23294.3.A1_at11/111+10548616..10549289hypothetical protein
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed
LOC_Os01g18760NANA1+10569485..10570999hypothetical protein
LOC_Os01g18770NANA1+10572708..10573307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23294.2.S1_at--4--10311Chr01:10547796..10547820 (25 bp)
TTTCGGATTATCTACAGATGCCTTC
LOC_Os01g18710
OsAffx.23294.2.S1_at--494--9871Chr01:10547784..10547808 (25 bp)
TACAGATGCCTTCAACTGGGAGTGG
LOC_Os01g18710
OsAffx.23294.2.S1_at--815--591Chr01:10547750..10547774 (25 bp)
ATGCGACAAGAGGTTGCGCCGGCCA
LOC_Os01g18710
OsAffx.23294.2.S1_at--368--6671Chr01:10547738..10547762 (25 bp)
GTTGCGCCGGCCATTGGCTTCATCT
LOC_Os01g18710
OsAffx.23294.2.S1_at--681--451Chr01:10547717..10547741 (25 bp)
ATCTCCGGCGACCTAATCGCAGGGC
LOC_Os01g18710
OsAffx.23294.2.S1_at--226--9771Chr01:10547704..10547728 (25 bp)
TAATCGCAGGGCTACTGATCTCCTT
LOC_Os01g18710
OsAffx.23294.2.S1_at--1058--7591Chr01:10547652..10547676 (25 bp)
GGGCAGCTAAGTTTTCCTGGTTTCA
LOC_Os01g18710
OsAffx.23294.2.S1_at--117--6811Chr01:10547647..10547666 (20 bp)
GTTTTCCTGGTTTCACTAAGAAGAG
LOC_Os01g18710
OsAffx.23294.2.S1_at--487--5591Chr01:10546339..10546363 (25 bp)
GAAATCGCGTCAAATGTCAGAAATA
LOC_Os01g18710
OsAffx.23294.2.S1_at--785--1411Chr01:10546321..10546345 (25 bp)
AGAAATACCCACATGTCAGGTCTCC
LOC_Os01g18710
OsAffx.23294.2.S1_at--462--2111Chr01:10546311..10546335 (25 bp)
ACATGTCAGGTCTCCCATCTCTCTT
LOC_Os01g18710
Target Sequence 
TTTCGGATTATCTACAGATGCCTTCAACTGGGAGTGGGGCAGTTATATGCGACAAGAGGTTGCGCCGGCCATTGGCTTCA
TCTCCGGCGACCTAATCGCAGGGCTACTGATCTCCTTCCATGTCTTCGGTGGTGGTTCTTCAAGGGGCAGCTAAGTTTTC
CTGGTTTCACTAAGAAGAGAGAGAAATCGCGTCAAATGTCAGAAATACCCACATGTCAGGTCTCCCATCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23294.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis