Browse Element(s) Details


OsAffx.23298.1.S1_at

Description tigr:9629.m01832
TID=OsAffx.23298.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1881011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18800Os.3663.1.S1_at11/111+10619601..10624330CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os01g18810OsAffx.23298.1.S1_at11/111+10625169..10627319hypothetical protein
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23298.1.S1_at--594--1831Chr01:10625727..10625751 (25 bp)
ACGCGCGACGCGGATCATGCTCTTG
LOC_Os01g18810
OsAffx.23298.1.S1_at--60--7971Chr01:10625716..10625740 (25 bp)
GGATCATGCTCTTGGCCTCGCGGAT
LOC_Os01g18810
OsAffx.23298.1.S1_at--90--1651Chr01:10625641..10625665 (25 bp)
AGCGCCTGTTCGTGGAAGCCAAGGC
LOC_Os01g18810
OsAffx.23298.1.S1_at--24--2951Chr01:10625621..10625645 (25 bp)
AAGGCCGAGAAAGCGCGCGCGTACC
LOC_Os01g18810
OsAffx.23298.1.S1_at--325--4691Chr01:10625567..10625591 (25 bp)
GCGGAGGTGCCGTCTGCAAACCATG
LOC_Os01g18810
OsAffx.23298.1.S1_at--926--5931Chr01:10625475..10625499 (25 bp)
GAGCAGCAGCACCGCGACGAACATG
LOC_Os01g18810
OsAffx.23298.1.S1_at--201--4431Chr01:10625447..10625471 (25 bp)
GCCTTACCGCCGTCCGAGAACGTGG
LOC_Os01g18810
OsAffx.23298.1.S1_at--46--1451Chr01:10625362..10625386 (25 bp)
AGAACCTGCCATCGGAAGGCAACCT
LOC_Os01g18810
OsAffx.23298.1.S1_at--171--5311Chr01:10625348..10625372 (25 bp)
GAAGGCAACCTGGTGGCCATGGCCA
LOC_Os01g18810
OsAffx.23298.1.S1_at--75--4611Chr01:10625266..10625290 (25 bp)
GCGACGTCGCAGAGATGACAATGGC
LOC_Os01g18810
OsAffx.23298.1.S1_at--923--671Chr01:10625252..10625276 (25 bp)
ATGACAATGGCTGCCGAGGCCAGCA
LOC_Os01g18810
Target Sequence 
ACGCGCGACGCGGATCATGCTCTTGGCCTCGCGGATCTCGCTGGCCGTCCTGAGGAAGGCGGCCGCCGCGGCGCGCGCGA
CGGCGGAGCGCCTGTTCGTGGAAGCCAAGGCCGAGAAAGCGCGCGCGTACCGCGCTCTCGCCGTGGCCCTGGGCGTCGAC
GCGGAGGTGCCGTCTGCAAACCATGGCGCCGACGAGCCGGAGCCCCTCCCGATGCTGCAGGCGCCGCCGCCGCCGGAGGA
CATGGCGCCGGAGAGCAGCAGCACCGCGACGAACATGGGCGCCTTACCGCCGTCCGAGAACGTGGCGCCGCCGGAAAGCG
ACGCGTCGAGCGTGGCCATGGCGCTGGCGATGGCGCCGCCGTCCGAGAACCTGCCATCGGAAGGCAACCTGGTGGCCATG
GCCATGGGCCTGGACCTCAACGCTCCGCCGCCATCCCCGGCCGCAGACACCATCGGCGTGGGCGACGTCGCAGAGATGAC
AATGGCTGCCGAGGCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis