Browse Element(s) Details


OsAffx.23386.1.S1_at

Description tigr:9629.m02438
TID=OsAffx.23386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=salt-stress induced protein (salt protein). (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2516011/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25140NANA1+14167642..14170947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25150OsAffx.23385.1.S1_at9/111+14171974..14174797Jacalin-like lectin domain containing protein
LOC_Os01g25160OsAffx.23386.1.S1_at11/111+14192960..14193587Jacalin-like lectin domain containing protein
LOC_Os01g25170OsAffx.23387.1.S1_at11/111+14203265..14203860hypothetical protein
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23386.1.S1_at--90--231Chr01:14193472..14193496 (25 bp)
ATATTGATGTGGCACCTGTGTCCCT
LOC_Os01g25160
OsAffx.23386.1.S1_at--484--8071Chr01:14193430..14193454 (25 bp)
GGAGCATAGACACCGTCGACTGCAT
LOC_Os01g25160
OsAffx.23386.1.S1_at--112--3011Chr01:14193377..14193401 (25 bp)
AATGAGCTTGCTGTCGGCCCATGGG
LOC_Os01g25160
OsAffx.23386.1.S1_at--672--6451Chr01:14193190..14193359 (25 bp)
GATCACACGTTTGTGTTGAAGTCCA
LOC_Os01g25160
OsAffx.23386.1.S1_at--1004--5731Chr01:14193140..14193164 (25 bp)
GACGTTTGGGCCATTCGCCACACAA
LOC_Os01g25160
OsAffx.23386.1.S1_at--718--3271Chr01:14193118..14193142 (25 bp)
CAACACCTTGATCGCACCGTGAATT
LOC_Os01g25160
OsAffx.23386.1.S1_at--692--8951Chr01:14193099..14193123 (25 bp)
TGAATTCGCTCACCTTTGTTACCAG
LOC_Os01g25160
OsAffx.23386.1.S1_at--1094--6451Chr01:14193065..14193089 (25 bp)
GATATACGGGCCATTCGGAACTCCT
LOC_Os01g25160
OsAffx.23386.1.S1_at--224--9451Chr01:14193051..14193075 (25 bp)
TCGGAACTCCTAATGGCACTTCTTT
LOC_Os01g25160
OsAffx.23386.1.S1_at--996--2031Chr01:14193034..14193058 (25 bp)
ACTTCTTTCAGGATCCCGGTGGAGA
LOC_Os01g25160
OsAffx.23386.1.S1_at--261--8491Chr01:14192996..14193020 (25 bp)
TGGCTTTTACGCTCTTGCAGATGGA
LOC_Os01g25160
Target Sequence 
ATATTGATGTGGCACCTGTGTCCCTCAAGTCCGTGACGGTTGGGAGCATAGACACCGTCGACTGCATCAGTTTCAACTTT
GAGGACAAGGATGGGAATGAGCTTGCTGTCGGCCCATGGGGTGGCACACTTGGAAGGGATCACACGTTTGTGTTGAAGTC
CAACGAGTACGTGAGGGAGGTTTCGGGGACGTTTGGGCCATTCGCCACACAACACCTTGATCGCACCGTGAATTCGCTCA
CCTTTGTTACCAGCCAAGGTACGATATACGGGCCATTCGGAACTCCTAATGGCACTTCTTTCAGGATCCCGGTGGAGAAA
GGCAGCATTGTTGGCTTTTACGCTCTTGCAGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis