Browse Element(s) Details


OsAffx.23514.4.S1_at

Description tigr:9629.m03273
TID=OsAffx.23514.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MSG15.19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3483010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34800NANA1+19538388..19541741retrotransposon protein, putative, unclassified
LOC_Os01g34810NANA1+19544645..19547536retrotransposon protein, putative, unclassified
LOC_Os01g34820NANA1+19548164..19551455retrotransposon protein, putative, unclassified
LOC_Os01g34830OsAffx.23514.4.S1_at10/111+19556334..19559767hypothetical protein
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23514.4.S1_at--397--5411Chr01:19558721..19558745 (25 bp)
GAAGCTGCTAGTGTATCTGCTAGAG
LOC_Os01g34830
OsAffx.23514.4.S1_at--787--651Chr01:19558609..19558633 (25 bp)
ATGCACTTGAATCTGATGACTTCCA
LOC_Os01g34830
OsAffx.23514.4.S1_at--899--1731NONE
ACCATACACCAGGTTGCAAGTAATT
NONE
OsAffx.23514.4.S1_at--892--10511Chr01:19556591..19556615 (25 bp)
TTCAGAATCAAATCCCAACCTCAAC
LOC_Os01g34830
OsAffx.23514.4.S1_at--813--3111Chr01:19556509..19556533 (25 bp)
AATTTCCAGTGGCACATTTCCGCAT
LOC_Os01g34830
OsAffx.23514.4.S1_at--781--1091Chr01:19556502..19556526 (25 bp)
AGTGGCACATTTCCGCATGTCGGAA
LOC_Os01g34830
OsAffx.23514.4.S1_at--563--7651Chr01:19556455..19556479 (25 bp)
GGGAGATTGGCCACTATGACTACCA
LOC_Os01g34830
OsAffx.23514.4.S1_at--47--2011Chr01:19556443..19556467 (25 bp)
ACTATGACTACCAGAAGCCCTACCT
LOC_Os01g34830
OsAffx.23514.4.S1_at--858--3651Chr01:19556420..19556444 (25 bp)
CTTCATCCCGTGTGTTCTTTACTAG
LOC_Os01g34830
OsAffx.23514.4.S1_at--53--8691Chr01:19556410..19556434 (25 bp)
TGTGTTCTTTACTAGCTTCTCATGC
LOC_Os01g34830
OsAffx.23514.4.S1_at--267--31Chr01:19556375..19556399 (25 bp)
ATTGGCTCAGCGATGACCATGACAG
LOC_Os01g34830
Target Sequence 
GAAGCTGCTAGTGTATCTGCTAGAGGGGGAGTCTTCAGAGAATTAGTTGATGATATGATAGAGCGAAAGTGTATATTGAA
ATGGAACACTATCGCTACAAGTCAATCAAAATATGCACTTGAATCTGATGACTTCCATGGTTCTAGCTCTGCAAGTTCAA
ATGAAACCATACACCAGGTTGCAAGTAATTTCAGAATCAAATCCCAACCTCAACTTCCCATCAAGAAGGACCAAGAGATA
AAAACCGTCTTCAATACTGTCAAGAATGGAAAATTTCCAGTGGCACATTTCCGCATGTCGGAAAACTTCTTCTCCTTAAG
GCCAGGGGAGATTGGCCACTATGACTACCAGAAGCCCTACCTTCATCCCGTGTGTTCTTTACTAGCTTCTCATGCAGTGA
TGATAATTGGCTCAGCGATGACCATGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23514.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis