Browse Element(s) Details


OsAffx.23593.1.S1_s_at

Description tigr:9629.m03821
TID=OsAffx.23593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4007011/11expressed protein
LOC_Os02g456101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23593.1.S1_s_at--578--3273Chr06:7956987..7957011 (25 bp)
CAACATCTGCGAGACGCGCGGCGAG
NONE
OsAffx.23593.1.S1_s_at--187--5431Chr01:22933199..22933223 (25 bp)
GAACCACCTTCTTCTGACCATCGAT
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--70--3271Chr01:22933255..22933279 (25 bp)
CAAAATCCCCCGACAAAGTAGCGAT
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--684--3292Chr04:2857374..2857395 (22 bp)
CAAAGTAGCGATTCTTTTAGCCCCG
NONE
OsAffx.23593.1.S1_s_at--737--2812Chr04:2857376..2857395 (20 bp)
AAGTAGCGATTCTTTTAGCCCCGCT
NONE
OsAffx.23593.1.S1_s_at--30--1651Chr01:22933274..22933298 (25 bp)
AGCGATTCTTTTAGCCCCGCTAGAA
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--19--10351Chr01:22933283..22933307 (25 bp)
TTTAGCCCCGCTAGAATAGAAAGAT
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--14--4514Chr09:15046249..15046269 (21 bp)
GCCCCGCTAGAATAGAAAGATTTTG
NONE
OsAffx.23593.1.S1_s_at--884--7431Chr01:22933351..22933375 (25 bp)
GTGTAAAACATAATTTGGGCAGCTG
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--918--2411Chr01:22933355..22933379 (25 bp)
AAAACATAATTTGGGCAGCTGTTTG
LOC_Os01g40070
OsAffx.23593.1.S1_s_at--415--5071Chr01:22933369..22933393 (25 bp)
GCAGCTGTTTGTTTTCAAATTCAAG
LOC_Os01g40070
Target Sequence 
CAACATCTGCGAGACGCGCGGCGAGGAGCTCGAGCCGGAGCTCCGGTTCGAGCTCGTCGACGACGAGACCTCGCCGGAGA
CCCCCGTCCGCTCCGAGGCCGCCAAGCGCGCCAGGGACAACATCGCCCACAACCTCCTCCACCGCGGCTTCGCCGGAACC
ACCTTCTTCTGACCATCGATCGATCGATCACACCACCGCCGCTTCTTGGTACAAAATCCCCCGACAAAGTAGCGATTCTT
TTAGCCCCGCTAGAATAGAAAGATTTTGCTAGTTCTTTTTTTTGGGTCAGCAGTGCAATGCGATGGAGTGTAAAACATAA
TTTGGGCAGCTGTTTGTTTTCAAATTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23593.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis