Browse Element(s) Details


Os.11777.1.S1_at

Description gb:AK069484.1
DB_XREF= gi:32979508
TID=Os.11777.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D12, full insert sequence.
FL= gb:AK069484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4005010/11peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11777.1.S1_at--32--2831NONE
AAGTTCAAGGGATCGTTTCTCAGTA
NONE
Os.11777.1.S1_at--1052--1411Chr01:22918936..22918960 (25 bp)
AGAACCCTGCAACTGGTAACACAGA
LOC_Os01g40050
Os.11777.1.S1_at--504--9851Chr01:22918889..22918913 (25 bp)
TACACAGGGTGGCACAGCAACCGGC
LOC_Os01g40050
Os.11777.1.S1_at--918--1771Chr01:22918870..22918894 (25 bp)
ACCGGCTGACTTTTGAACCTGATTC
LOC_Os01g40050
Os.11777.1.S1_at--885--1091Chr01:22918696..22918720 (25 bp)
AGTGGTTGATCCTCTCCTTGAGAAA
LOC_Os01g40050
Os.11777.1.S1_at--647--8931Chr01:22918601..22918625 (25 bp)
TGACCTGACCGCATAAGCTGCTTGA
LOC_Os01g40050
Os.11777.1.S1_at--715--7771Chr01:22918576..22918600 (25 bp)
GGTGCTTTACTGTTTCCTTCATAAG
LOC_Os01g40050
Os.11777.1.S1_at--588--9511Chr01:22918558..22918582 (25 bp)
TCATAAGCGGCCTTCCTGAATTTTT
LOC_Os01g40050
Os.11777.1.S1_at--270--8751Chr01:22918433..22918457 (25 bp)
TGTAACTGTACACTGCGTTTCGCTA
LOC_Os01g40050
Os.11777.1.S1_at--23--4651Chr01:22918419..22918443 (25 bp)
GCGTTTCGCTATGTTGTGGTTCATG
LOC_Os01g40050
Os.11777.1.S1_at--872--7631Chr01:22918389..22918413 (25 bp)
GGGACCACCTGTAGACTAGTGCTTT
LOC_Os01g40050
Target Sequence 
AAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGG
GTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGNCGAGGAAAGATGATCCAGATGACTATG
TAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAA
TGGGCAGGCAGATCTNTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAAT
TTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCNCCGTGCAAAAGATTACCTCATATCATAACAGTG
CCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGT
AGACTAGTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis