Browse Element(s) Details


OsAffx.11398.1.S1_at

Description tigr:9629.m03815
TID=OsAffx.11398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4002011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11398.1.S1_at--520--6091Chr01:22902876..22902900 (25 bp)
GAGTCTCGAGGCTAGGGACGACACA
LOC_Os01g40020
OsAffx.11398.1.S1_at--898--71Chr01:22902736..22902760 (25 bp)
ATTGCGGTGCTGATCAATCGTGATT
LOC_Os01g40020
OsAffx.11398.1.S1_at--128--2651Chr01:22902677..22902701 (25 bp)
AACCAACCGTAATGCGCAGTTCTGG
LOC_Os01g40020
OsAffx.11398.1.S1_at--667--4551Chr01:22902653..22902677 (25 bp)
GCGCCGGATGTTGTTATTTCTCAAC
LOC_Os01g40020
OsAffx.11398.1.S1_at--505--1911Chr01:22902582..22902606 (25 bp)
ACATTGTTGGGAGCAACCGTCCTTA
LOC_Os01g40020
OsAffx.11398.1.S1_at--910--1771Chr01:22902567..22902591 (25 bp)
ACCGTCCTTACTATGTGTTGTCAAA
LOC_Os01g40020
OsAffx.11398.1.S1_at--472--8811Chr01:22902552..22902576 (25 bp)
TGTTGTCAAATCGTGATGATGCCCC
LOC_Os01g40020
OsAffx.11398.1.S1_at--108--2191Chr01:22902527..22902551 (25 bp)
ACACATTTGGTGTACCAGCTCGAAT
LOC_Os01g40020
OsAffx.11398.1.S1_at--6--7591Chr01:22902476..22902500 (25 bp)
GGGCTCGACGATAATAACCATGGAA
LOC_Os01g40020
OsAffx.11398.1.S1_at--189--711Chr01:22902445..22902469 (25 bp)
ATGAGTGAGAGTGTCGCTCTCCCTA
LOC_Os01g40020
OsAffx.11398.1.S1_at--953--9771Chr01:22902399..22902423 (25 bp)
TAAGGTGGCAGTCTCCAATAGCCCC
LOC_Os01g40020
Target Sequence 
GAGTCTCGAGGCTAGGGACGACACAAGCACTAAGGCTGAAAAAGATGCGTAAAGATGAGTTTTGGTACTTCTTTAAGACC
CTTTCTTTTGGAAGTACAAACCCAGATGAGCATAAGGAGCTAATACCAATAGCCATGAAGATTGCGGTGCTGATCAATCG
TGATTTTATTGGTGCACATGTATTTTCAAGGTTACTACGAACCAACCGTAATGCGCAGTTCTGGCGCCGGATGTTGTTAT
TTCTCAACAAAGTAATAGAGTGTAACTTGCATGTATTTGGAGAACATGTATCTGACATTGTTGGGAGCAACCGTCCTTAC
TATGTGTTGTCAAATCGTGATGATGCCCCACACATTTGGTGTACCAGCTCGAATACAATTCCAGGGCATTTGGTGGATTG
GGGCTCGACGATAATAACCATGGAAGGCATAATGAGTGAGAGTGTCGCTCTCCCTACCGAAGGAAACTTTCAGGTGATAA
GGTGGCAGTCTCCAATAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis