Browse Element(s) Details


OsAffx.23620.1.S1_at

Description tigr:9629.m03959
TID=OsAffx.23620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4141011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein
LOC_Os01g41420Os.10355.1.S1_x_at4/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.10355.1.S1_at2/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.22840.1.A1_at1/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41430Os.10348.1.S1_at11/111+23782922..23784883UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g41440NANA1+23788034..23789476hypothetical protein
LOC_Os01g41450NANA1+23790584..23792033Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23620.1.S1_at--871--1451Chr01:23769066..23769090 (25 bp)
AGAAGTTCACCGGTGAGCTGCGTGC
LOC_Os01g41410
OsAffx.23620.1.S1_at--1084--5051Chr01:23769103..23769127 (25 bp)
GCAGCTCGATCTCCATTTACTTCGC
LOC_Os01g41410
OsAffx.23620.1.S1_at--888--2451Chr01:23769149..23769173 (25 bp)
AACAATGTTGTATCGAGGGCTCTGC
LOC_Os01g41410
OsAffx.23620.1.S1_at--19--1091Chr01:23769164..23769188 (25 bp)
AGGGCTCTGCACCACGATCGAAGTG
LOC_Os01g41410
OsAffx.23620.1.S1_at--212--5331Chr01:23769183..23769207 (25 bp)
GAAGTGGTCCTCGAGCTCTGGGTAC
LOC_Os01g41410
OsAffx.23620.1.S1_at--546--1551Chr01:23769196..23769220 (25 bp)
AGCTCTGGGTACTCCGATTGCCTTG
LOC_Os01g41410
OsAffx.23620.1.S1_at--963--71Chr01:23769212..23769236 (25 bp)
ATTGCCTTGCCTAGTTGGAGCTTCA
LOC_Os01g41410
OsAffx.23620.1.S1_at--551--8071Chr01:23769228..23769252 (25 bp)
GGAGCTTCATTAAGCCATGCATGCT
LOC_Os01g41410
OsAffx.23620.1.S1_at--877--611Chr01:23769248..23769272 (25 bp)
ATGCTCGCGGGAAGGAGCTCAAGCT
LOC_Os01g41410
OsAffx.23620.1.S1_at--1034--8071Chr01:23769261..23769285 (25 bp)
GGAGCTCAAGCTGATAGCCCACTCG
LOC_Os01g41410
OsAffx.23620.1.S1_at--784--1591Chr01:23769269..23769293 (25 bp)
AGCTGATAGCCCACTCGTGGAGTCT
LOC_Os01g41410
Target Sequence 
AGAAGTTCACCGGTGAGCTGCGTGCCGTCACCGGCACGCAGCTCGATCTCCATTTACTTCGCCGTCTTCCCCTACTGCAT
GCAAACAATGTTGTATCGAGGGCTCTGCACCACGATCGAAGTGGTCCTCGAGCTCTGGGTACTCCGATTGCCTTGCCTAG
TTGGAGCTTCATTAAGCCATGCATGCTCGCGGGAAGGAGCTCAAGCTGATAGCCCACTCGTGGAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis