Browse Element(s) Details


OsAffx.23622.1.S1_at

Description tigr:9629.m03974
TID=OsAffx.23622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4156011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41510Os.23476.1.A1_at8/111+23825291..23829223Calcineurin B-like protein 4, putative, expressed
LOC_Os01g41516OsAffx.19542.3.S1_x_at5/111+23830700..23832493retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g41522NANA1+23833497..23834608retrotransposon protein, putative, unclassified
LOC_Os01g41530Os.56319.1.S1_at11/111+23836946..23839191F-box domain containing protein, expressed
LOC_Os01g41540OsAffx.2206.1.S1_at11/111+23840209..23840782hypothetical protein
LOC_Os01g41550Os.13623.1.S1_at9/111+23841856..23843623Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23622.1.S1_at--34--4971Chr01:23850320..23850344 (25 bp)
GCATCTTGGACTGCATCCGATCGAA
LOC_Os01g41560
OsAffx.23622.1.S1_at--458--4651Chr01:23850258..23850282 (25 bp)
GCGTCTAACCTGGATACCACGAGTT
LOC_Os01g41560
OsAffx.23622.1.S1_at--124--6771Chr01:23850236..23850260 (25 bp)
GTTAATGTTGGCACTGACAGCTCGT
LOC_Os01g41560
OsAffx.23622.1.S1_at--1004--9031Chr01:23850212..23850236 (25 bp)
TGCAGCGTCGGCCTATTAGAGACAT
LOC_Os01g41560
OsAffx.23622.1.S1_at--754--10751Chr01:23850143..23850167 (25 bp)
TTGAGCAGGAGTTCGACTTACCCCG
LOC_Os01g41560
OsAffx.23622.1.S1_at--1047--2831Chr01:23850115..23850139 (25 bp)
AAGTAGTTTCGGTCACAGTGCGTGG
LOC_Os01g41560
OsAffx.23622.1.S1_at--527--7691Chr01:23850091..23850115 (25 bp)
GGGTACTCATCTGTGACAGCGGCAA
LOC_Os01g41560
OsAffx.23622.1.S1_at--201--2151Chr01:23850076..23850100 (25 bp)
ACAGCGGCAACATGCGGCTATGGCA
LOC_Os01g41560
OsAffx.23622.1.S1_at--1143--551Chr01:23849969..23849993 (25 bp)
ATCCTGAATCGGCTGGTGGGAATTA
LOC_Os01g41560
OsAffx.23622.1.S1_at--442--10611Chr01:23849905..23849929 (25 bp)
TTCCTGTTCAAATTCGGACCGTTCT
LOC_Os01g41560
OsAffx.23622.1.S1_at--673--6051Chr01:23849872..23849896 (25 bp)
GAGATTGCATATTTTCCCAGGGAGA
LOC_Os01g41560
Target Sequence 
GCATCTTGGACTGCATCCGATCGAACGTCAGCCCCTGCTCAACATAACTCAAGTGCAAAGCAGCGTCTAACCTGGATACC
ACGAGTTAATGTTGGCACTGACAGCTCGTGCAGCGTCGGCCTATTAGAGACATACGTAAGCATGTTAGTACCAATCGGAC
AAAAGAAAAAGAAAGAATTGAGCAGGAGTTCGACTTACCCCGAGGAAGTAGTTTCGGTCACAGTGCGTGGGGTACTCATC
TGTGACAGCGGCAACATGCGGCTATGGCACGGTAGGAGTAAAGGTCTATTAATAGTGAAATTTGGTAAGCCACAAAATCA
TCATCGAACTGGAGTCAGTATCGGCTTCAGAATCCTGAATCGGCTGGTGGGAATTATCAAGTCACCAATAGATTATGCTC
AAAGGAAAAAGGGTGTTCCTGTTCAAATTCGGACCGTTCTTTCTAAAAGAGATTGCATATTTTCCCAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis