Browse Element(s) Details


OsAffx.23691.1.S1_at

Description tigr:9629.m04470
TID=OsAffx.23691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4667010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein
LOC_Os01g46660OsAffx.12611.1.S1_at1/111+26895037..26900663transposon protein, putative, Mutator sub-class
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23691.1.S1_at--1149--451Chr01:26904692..26904716 (25 bp)
ATCTCCATCCGGCTCGTAGGTGTCG
LOC_Os01g46670
OsAffx.23691.1.S1_at--319--7171Chr01:26904548..26904572 (25 bp)
GTCTCGTACCATGACATCGTACTTG
LOC_Os01g46670
OsAffx.23691.1.S1_at--257--8611Chr01:26904514..26904538 (25 bp)
TGGTGCCGAGTTTCTGCATCGACGG
LOC_Os01g46670
OsAffx.23691.1.S1_at--988--8931Chr01:26904429..26904453 (25 bp)
TGACGGCGCCAATGCCATGATCCGG
LOC_Os01g46670
OsAffx.23691.1.S1_at--795--7711Chr01:26904405..26904429 (25 bp)
GGGTGACCTGCGTAATCTGATATGG
LOC_Os01g46670
OsAffx.23691.1.S1_at--295--2691Chr01:26904303..26904327 (25 bp)
AAGCTTTAGAGTTTCCTCCATTGAA
LOC_Os01g46670
OsAffx.23691.1.S1_at--1155--2251Chr01:26903659..26903683 (25 bp)
AAATAGCTGATTTCCATATGCCCTG
LOC_Os01g46670
OsAffx.23691.1.S1_at--1043--251Chr01:26903644..26903668 (25 bp)
ATATGCCCTGGACTATAGTCGGCTG
LOC_Os01g46670
OsAffx.23691.1.S1_at--990--8131NONE
GGACAAACGCCCGTATAAATCGGAT
NONE
OsAffx.23691.1.S1_at--979--491Chr01:26903445..26903465 (21 bp)
ATCGGATGACAATCCAGTGGATCTC
LOC_Os01g46670
OsAffx.23691.1.S1_at--392--8571Chr01:26903428..26903452 (25 bp)
TGGATCTCATTACCCCTCTATTTTG
LOC_Os01g46670
Target Sequence 
ATCTCCATCCGGCTCGTAGGTGTCGAGGGGCTCGACCCGCGCCTGCCTGCCCCGGTGCCGCCGGTTTTCGACCTCGCCGT
GGACGTCGCCGGCGTCTCACCTCGCTACCATGCCTGCGGCGGAGGCGGGGGCTCCAAGCTGCGCGTCTCGTACCATGACA
TCGTACTTGCCTCGGCCCTGGTGCCGAGTTTCTGCATCGACGGCAAGCTGCTGGAGGGCGGCAGCGCGGCCGGCGTGGTC
GTCGTCAAGGCCAGAGGTGGGGCTGACGGCGCCAATGCCATGATCCGGGGTGACCTGCGTAATCTGATATGGACCGAGAG
GCATGTTCTAGGAAAGGTCAATTTCGATGTAAGTGGGAACTTGGGGAAGGAGTCCGGCTTAGGTGATTTAAGCTTTAGAG
TTTCCTCCATTGAAGTTAATTTTGCGCATGTAGAAATAGCTGATTTCCATATGCCCTGGACTATAGTCGGCTGGACAAAC
GCCCGTATAAATCGGATGACAATCCAGTGGATCTCATTACCCCTCTATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis