Browse Element(s) Details


OsAffx.23693.1.S1_at

Description tigr:9629.m04478
TID=OsAffx.23693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4674010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein
LOC_Os01g46750Os.19404.1.S1_at11/111+26955766..26963795AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23693.1.S1_at--582--3051NONE
AATCGTGGAGGCATTACTTAGTACT
NONE
OsAffx.23693.1.S1_at--315--4951Chr01:26950780..26950800 (21 bp)
GCATTACTTAGTACTTATGGCACCT
LOC_Os01g46740
OsAffx.23693.1.S1_at--658--3651Chr01:26950789..26950813 (25 bp)
CTTATGGCACCTATCATCGATGGGC
LOC_Os01g46740
OsAffx.23693.1.S1_at--1133--491Chr01:26950804..26950828 (25 bp)
ATCGATGGGCCACCGGACCCTAGCT
LOC_Os01g46740
OsAffx.23693.1.S1_at--934--3691Chr01:26950882..26950906 (25 bp)
CTATCTGGCCCAAGGTCGTCATCGC
LOC_Os01g46740
OsAffx.23693.1.S1_at--908--9391Chr01:26950961..26950985 (25 bp)
TCGTACCACGGCATGACGGCATCGT
LOC_Os01g46740
OsAffx.23693.1.S1_at--1009--2371Chr01:26951088..26951112 (25 bp)
AAACGCCAAGATGCGGAAGGGCCTG
LOC_Os01g46740
OsAffx.23693.1.S1_at--168--4551Chr01:26951136..26951160 (25 bp)
GCGCGTTCTAGGGAAGGTCGACTTC
LOC_Os01g46740
OsAffx.23693.1.S1_at--199--5431Chr01:26951172..26951196 (25 bp)
GAACCTCGGAGAGCAGGTGACTCGT
LOC_Os01g46740
OsAffx.23693.1.S1_at--1090--5711Chr01:26951190..26951214 (25 bp)
GACTCGTGATGATCTGAATTGTAAG
LOC_Os01g46740
OsAffx.23693.1.S1_at--331--5191Chr01:26951205..26951229 (25 bp)
GAATTGTAAGGTCTCCTCCTTTGAG
LOC_Os01g46740
Target Sequence 
AATCGTGGAGGCATTACTTAGTACTTATGGCACCTATCATCGATGGGCCACCGGACCCTAGCTTCTCCGTTCGGCTCGTG
GGCGTCGAGGGGCTCGACGTCGACGCCGACGCACGCCTATCTGGCCCAAGGTCGTCATCGCCGGCCGCGCTACCGGGCCT
GCGGCGGGGGCAGGGACGACACCGCGCTGCGCGTCTCGTACCACGGCATGACGGCATCGTCCTCGCCCGGGCTCCCGTGC
CGTCGTTCTGCATCGACGGCAAGCTGTTGGAGGGCGGCGGCGCGGTAGGCGTGGTCGTCGTCAAGGCCGAAGCGGCGGCG
GCAAACGCCAAGATGCGGAAGGGCCTGCGCGATCTGATATGGACCGAGAGGCGCGTTCTAGGGAAGGTCGACTTCGACGT
GGAGGGGAACCTCGGAGAGCAGGTGACTCGTGATGATCTGAATTGTAAGGTCTCCTCCTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis