Browse Element(s) Details


OsAffx.23727.1.S1_x_at

Description tigr:9629.m04779
TID=OsAffx.23727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4948011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23727.1.S1_x_at--30--6971Chr01:28791227..28791251 (25 bp)
GTAGCGGTGTCAATCATCGTCCCAT
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--1097--411Chr01:28791215..28791239 (25 bp)
ATCATCGTCCCATGGAGTGAGACCA
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--713--6111Chr01:28791205..28791225 (21 bp)
GAGTGAGACCATGCTCACATGTCTG
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--1089--3231Chr01:28791019..28791043 (25 bp)
CAAGCTCATGAACGCCTCCAATCTT
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--323--9211Chr01:28791003..28791027 (25 bp)
TCCAATCTTGCCCTCTTCGGTGAAT
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--233--3051Chr01:28791000..28791024 (25 bp)
AATCTTGCCCTCTTCGGTGAATATG
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--1024--9571Chr01:28790998..28791022 (25 bp)
TCTTGCCCTCTTCGGTGAATATGGT
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--1028--10691Chr01:28790996..28791020 (25 bp)
TTGCCCTCTTCGGTGAATATGGTGG
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--888--4291Chr01:28790992..28791016 (25 bp)
CCTCTTCGGTGAATATGGTGGCAGC
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--883--8991Chr01:28790983..28791007 (25 bp)
TGAATATGGTGGCAGCGAGCTCATT
LOC_Os01g49480
OsAffx.23727.1.S1_x_at--24--3111Chr01:28790981..28791005 (25 bp)
AATATGGTGGCAGCGAGCTCATTTT
LOC_Os01g49480
Target Sequence 
GTAGCGGTGTCAATCATCGTCCCATGGAGTGAGACCATGCTCACATGTCTGCCCCCATGCTCCAAGCTCATGAACGCCTC
CAATCTTGCCCTCTTCGGTGAATATGGTGGCAGCGAGCTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23727.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis