Browse Element(s) Details


OsAffx.23759.1.S1_at

Description tigr:9629.m05051
TID=OsAffx.23759.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5209011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52050Os.15135.1.S1_at11/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52050OsAffx.6027.1.S1_at1/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52060Os.28578.1.S1_at2/111+30264395..30264722expressed protein
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23759.1.S1_at--1058--1231Chr01:30278713..30278737 (25 bp)
AGTTGCTCGTGGAGTCGATTCGGAA
LOC_Os01g52090
OsAffx.23759.1.S1_at--390--1351Chr01:30278559..30278583 (25 bp)
AGAGATTGCGCGTCTCACTGAGGAA
LOC_Os01g52090
OsAffx.23759.1.S1_at--566--5191Chr01:30278452..30278476 (25 bp)
GCAATGTCGCCGTGAATGCTTATTC
LOC_Os01g52090
OsAffx.23759.1.S1_at--112--9071Chr01:30278436..30278460 (25 bp)
TGCTTATTCTTAGCCTAGGGTCTGT
LOC_Os01g52090
OsAffx.23759.1.S1_at--60--1011Chr01:30277098..30277122 (25 bp)
AGGATTGCTGTGGTAGTCGAACTTA
LOC_Os01g52090
OsAffx.23759.1.S1_at--957--712Chr06:13077101..13077312 (25 bp)
ATGATTTTCAGATCCCTTGATTTTA
NONE
OsAffx.23759.1.S1_at--96--6531Chr01:30277022..30277046 (25 bp)
GATTTGATCAGCTTACACGACTACA
LOC_Os01g52090
OsAffx.23759.1.S1_at--156--9871Chr01:30277009..30277033 (25 bp)
TACACGACTACACCCAGTGCAGATT
LOC_Os01g52090
OsAffx.23759.1.S1_at--920--5031Chr01:30276991..30277015 (25 bp)
GCAGATTGTGGTGTAGGTCTCCTTT
LOC_Os01g52090
OsAffx.23759.1.S1_at--543--6931Chr01:30276979..30277003 (25 bp)
GTAGGTCTCCTTTGTATTTCTTGTA
LOC_Os01g52090
OsAffx.23759.1.S1_at--576--3171Chr01:30276932..30276956 (25 bp)
AATTGTTGTATCTGTCTCTTTGGGA
LOC_Os01g52090
Target Sequence 
AGTTGCTCGTGGAGTCGATTCGGAAGCTTGGGGATGTCTATGAGAGGGTGGAGAGTAGCAAGAGGCAGCACATGGCTGAG
GTTGAGTGGTTGCGGAGGGATCTCCAAAGGGATCTTGAGGTGAGGAGGAGGGAGATTTTGGAGAAGGCGCAAGCAGAGAT
TGCGCGTCTCACTGAGGAAGATGGGGAGGAGGGTGACCTCAAGGAGGGTGAGGGTGATGATAACAAGAGGTTTGGGGATG
ATGGTGGTGGCGAAGAGTAGAGCAATGTCGCCGTGAATGCTTATTCTTAGCCTAGGGTCTGTAAGTTCGGGAAATCAGGG
CTAAAACATGGATTTTGTGTTAGTAGTTGGATCCACAAGGATTGCTGTGGTAGTCGAACTTACATCTGTAACTTTAGATA
TTATATGATTTTCAGATCCCTTGATTTTAGATTGATTTGATCAGCTTACACGACTACACCCAGTGCAGATTGTGGTGTAG
GTCTCCTTTGTATTTCTTGTAATCAAAATAGTGGTTCTCATTTAATTGTTGTATCTGTCTCTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis