Browse Element(s) Details


OsAffx.23761.2.S1_x_at

Description tigr:9629.m05072
TID=OsAffx.23761.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5227011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23761.2.S1_x_at--605--2711Chr01:30376096..30376120 (25 bp)
AAGCTTGCTTCGGTAGCCATGGAGA
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--445--8951Chr01:30376122..30376146 (25 bp)
TGCAACGGAGTACAGCGGGTCCTTT
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--137--10311Chr01:30376144..30376168 (25 bp)
TTTCTGGCTGCATACACCATTGGTG
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--802--7931Chr01:30376179..30376203 (25 bp)
GGATAATTTCAATGCCCAGTTCTGG
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--1079--6711Chr01:30376197..30376221 (25 bp)
GTTCTGGTGCTCTACTCTGAAGTAC
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--1104--1711Chr01:30376241..30376265 (25 bp)
ACCAGCTCCGTTTGCATGGTGATCA
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--886--8611Chr01:30376257..30376281 (25 bp)
TGGTGATCACCCTAACAATCTCTTA
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--1145--871Chr01:30376319..30376343 (25 bp)
AGGCCAGCAATCCTCTGTGGATGTC
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--658--3111Chr01:30376384..30376408 (25 bp)
AATATCTCGGACATCATGCTGGGAA
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--211--851Chr01:30376443..30376467 (25 bp)
ATGGAAGTCCAGGATGGCGCCTTAC
LOC_Os01g52270
OsAffx.23761.2.S1_x_at--39--8411Chr01:30376458..30376482 (25 bp)
GGCGCCTTACTACAGCTACATGATA
LOC_Os01g52270
Target Sequence 
AAGCTTGCTTCGGTAGCCATGGAGATTGCAACGGAGTACAGCGGGTCCTTTCTGGCTGCATACACCATTGGTGGATTACT
GAGGGATAATTTCAATGCCCAGTTCTGGTGCTCTACTCTGAAGTACCTGAGGGCATACATACGCAACCAGCTCCGTTTGC
ATGGTGATCACCCTAACAATCTCTTACTGAAGGGCCAATGGGTGCATTGCTTGAGATTTGCAGAGGCCAGCAATCCTCTG
TGGATGTCTGATTACTATGAGACGGACTCCTGTCCGGACCAGGCTCCCAATATCTCGGACATCATGCTGGGAAGCGCCAC
ACCTCGCGGGAGATTCGAGGCTCTAGGATGGAAGTCCAGGATGGCGCCTTACTACAGCTACATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23761.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis