Browse Element(s) Details


OsAffx.23792.1.S1_at

Description tigr:9629.m05342
TID=OsAffx.23792.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5477011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein
LOC_Os01g54810Os.23671.1.S1_at11/111+31850897..31853962expressed protein
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23792.1.S1_at--1087--3911Chr01:31836371..31836395 (25 bp)
CTGGCCGCTGCGAAGAACGACACTA
LOC_Os01g54770
OsAffx.23792.1.S1_at--349--5451Chr01:31836385..31836446 (25 bp)
GAACGACACTAGCACCGACACAGGT
LOC_Os01g54770
OsAffx.23792.1.S1_at--202--8291Chr01:31836463..31836487 (25 bp)
GGCATTATCAGCACGATTCAGCAGT
LOC_Os01g54770
OsAffx.23792.1.S1_at--288--3451Chr01:31836484..31836508 (25 bp)
CAGTTTCGTCTGCTTGGTGTCACAC
LOC_Os01g54770
OsAffx.23792.1.S1_at--375--7751Chr01:31836499..31836523 (25 bp)
GGTGTCACACCTGAACGGAAGCTGT
LOC_Os01g54770
OsAffx.23792.1.S1_at--278--9371Chr01:31836530..31836554 (25 bp)
TCGACGCAGCGAATTCCTCAGGATA
LOC_Os01g54770
OsAffx.23792.1.S1_at--397--8691Chr01:31836555..31836579 (25 bp)
TGTCGGTTTGGCATCAATGGTCTTT
LOC_Os01g54770
OsAffx.23792.1.S1_at--994--1031Chr01:31836630..31836654 (25 bp)
AGGTGGCATCGGACAATTGCGCCGC
LOC_Os01g54770
OsAffx.23792.1.S1_at--862--71Chr01:31836645..31836669 (25 bp)
ATTGCGCCGCCAGTTCAAGATTAAG
LOC_Os01g54770
OsAffx.23792.1.S1_at--1066--8391Chr01:31836751..31836775 (25 bp)
TGGACCTTTGCGCTTAACCTCGGAA
LOC_Os01g54770
OsAffx.23792.1.S1_at--19--1231Chr01:31836791..31836815 (25 bp)
AGTTGACTACCGGTGTCGACTGCAA
LOC_Os01g54770
Target Sequence 
CTGGCCGCTGCGAAGAACGACACTAGCACCGACACAGGTGCGCATGCCGCTAGACGGCATTATCAGCACGATTCAGCAGT
TTCGTCTGCTTGGTGTCACACCTGAACGGAAGCTGTGCTTCATCGACGCAGCGAATTCCTCAGGATATGTCGGTTTGGCA
TCAATGGTCTTTGAGACCACCGGAGATGACATGTGTGGTGGTGCCGGAGAATGGGTGAGGAAAGGTGGCATCGGACAATT
GCGCCGCCAGTTCAAGATTAAGAGTGCGGATGCCAGTAAACTGCGGTGGTTCTGCGAGAAGAGTTGCACCCTCTTGTTCA
CCCTCGGCAAAGGAAGCAGTCCCTGGACCTTTGCGCTTAACCTCGGAACAAAGAAAATCGAGAAGTTGACTACCGGTGTC
GACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis