Browse Element(s) Details


OsAffx.23826.1.S1_at

Description tigr:9629.m05644
TID=OsAffx.23826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5759011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23826.1.S1_at--273--8191Chr01:33628049..33628073 (25 bp)
GGAAGCCGGAACAGCAATGCCCATC
LOC_Os01g57590
OsAffx.23826.1.S1_at--153--7211Chr01:33627974..33627998 (25 bp)
GTCGTTACTCGTTACGTTGCATATT
LOC_Os01g57590
OsAffx.23826.1.S1_at--236--6051Chr01:33627933..33627957 (25 bp)
GAGATATATGCCTCGCTTTGCAGCG
LOC_Os01g57590
OsAffx.23826.1.S1_at--5--4131Chr01:33627920..33627944 (25 bp)
CGCTTTGCAGCGGAAACGGTAACTT
LOC_Os01g57590
OsAffx.23826.1.S1_at--691--7831Chr01:33627903..33627927 (25 bp)
GGTAACTTCTACTAACAGTGGGTCT
LOC_Os01g57590
OsAffx.23826.1.S1_at--1001--2111Chr01:33627889..33627913 (25 bp)
ACAGTGGGTCTTCACATAGGCCTAT
LOC_Os01g57590
OsAffx.23826.1.S1_at--631--2511Chr01:33627814..33627838 (25 bp)
AACATTCATGCACATGCTTGGGCAT
LOC_Os01g57590
OsAffx.23826.1.S1_at--484--10831Chr01:33627797..33627821 (25 bp)
TTGGGCATTGGTGGCATTCAGAAAT
LOC_Os01g57590
OsAffx.23826.1.S1_at--301--431Chr01:33627755..33627779 (25 bp)
ATCATTGCATGGATCATTCGTTCTG
LOC_Os01g57590
OsAffx.23826.1.S1_at--641--3591Chr01:33627741..33627765 (25 bp)
CATTCGTTCTGCACCCTATAATTGG
LOC_Os01g57590
OsAffx.23826.1.S1_at--233--6311Chr01:33627707..33627731 (25 bp)
GATGAGATGGACTTGGACCCTATTA
LOC_Os01g57590
Target Sequence 
GGAAGCCGGAACAGCAATGCCCATCAGGTCCACGATTGGATAATCTTTTTGCAGAAAATGCAGCTGCTGCGGGTGGTCGT
TACTCGTTACGTTGCATATTATCAGTTATGGCGATCGAGATATATGCCTCGCTTTGCAGCGGAAACGGTAACTTCTACTA
ACAGTGGGTCTTCACATAGGCCTATGGGGTGCGGGGTGCCTGCCCTGCAAGACGGCAATTATGAGAGTGCAACTGAACAT
TCATGCACATGCTTGGGCATTGGTGGCATTCAGAAATTACTTACAACGGCAGGAATCATTGCATGGATCATTCGTTCTGC
ACCCTATAATTGGGAGCAAACAGATGAGATGGACTTGGACCCTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis