Browse Element(s) Details


OsAffx.23827.1.S1_x_at

Description tigr:9629.m05651
TID=OsAffx.23827.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5766011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23827.1.S1_x_at--1107--8391Chr01:33668582..33668606 (25 bp)
GGCGCGTGGTGCACGATATCACGAA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--1017--10151Chr01:33668598..33668622 (25 bp)
TATCACGAAGCAGATGGCCAACGGA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--111--10631Chr01:33668626..33668650 (25 bp)
TTCGTCCGGGTGTCGAGGAAGCCCA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--209--7691Chr01:33668633..33668657 (25 bp)
GGGTGTCGAGGAAGCCCACTAACCA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--693--6191Chr01:33668640..33668664 (25 bp)
GAGGAAGCCCACTAACCACTCCAAG
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--727--9791Chr01:33668652..33668676 (25 bp)
TAACCACTCCAAGTACACCGGGAGG
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--1003--4231Chr01:33668680..33668704 (25 bp)
CCGTACGAGGCCTACACCAAGAGGA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--300--9871Chr01:33668692..33668716 (25 bp)
TACACCAAGAGGAAGACGTGCAAAG
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--935--1871Chr01:33668707..33668731 (25 bp)
ACGTGCAAAGGGAGGAACAAGTTCA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--1064--2451Chr01:33668722..33668746 (25 bp)
AACAAGTTCAAGCATGACGAGATCA
LOC_Os01g57660
OsAffx.23827.1.S1_x_at--479--8931Chr01:33668736..33668760 (25 bp)
TGACGAGATCAAGATGTACTACCTC
LOC_Os01g57660
Target Sequence 
GGCGCGTGGTGCACGATATCACGAAGCAGATGGCCAACGGAGGGTTCGTCCGGGTGTCGAGGAAGCCCACTAACCACTCC
AAGTACACCGGGAGGGACCCGTACGAGGCCTACACCAAGAGGAAGACGTGCAAAGGGAGGAACAAGTTCAAGCATGACGA
GATCAAGATGTACTACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis