Browse Element(s) Details


OsAffx.23830.1.S1_at

Description gb:AK064588.1
DB_XREF= gi:32974606
TID=OsAffx.23830.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-G02, full insert sequence.
FL= gb:AK064588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g505701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50530Os.51052.1.S1_at11/113+28801324..28802828expressed protein
LOC_Os03g50540Os.12117.1.S1_at11/113+28804859..28809309NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g50550NANA3+28811030..28812067Protein kinase domain containing protein
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein
LOC_Os03g50580NANA3+28831688..28832032expressed protein
LOC_Os03g50590OsAffx.25660.1.S1_at11/113+28839634..28840107expressed protein
LOC_Os03g50600NANA3+28845225..28845605hypothetical protein
LOC_Os03g50610NANA3+28849197..28849529hypothetical protein
LOC_Os03g50620Os.11878.1.S1_at6/113+28850247..28856094expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23830.1.S1_at--976--5271NONE
GAATGTTGATCTTCTGACCACGAAA
NONE
OsAffx.23830.1.S1_at--1041--3831Chr01:19013706..19013730 (25 bp)
CTGAGCAAGAAGTCCATCCGATAGT
NONE
OsAffx.23830.1.S1_at--1127--5431Chr11:11873437..11873461 (25 bp)
GAGCCGGACCGGAGTCGAATACTTC
NONE
OsAffx.23830.1.S1_at--969--5231Chr11:11873453..11873477 (25 bp)
GAATACTTCGGATCCTGCATCTGCT
NONE
OsAffx.23830.1.S1_at--646--5132Chr11:11873492..11873515 (24 bp)
GCAAATGTGCCTTTTGGACCGATCC
NONE
OsAffx.23830.1.S1_at--262--1531NONE
AGCGGGATCTTTCTCCAAGCTAAGT
NONE
OsAffx.23830.1.S1_at--1127--7291NONE
GTGCTGATAAACTTGTCTCCGCTCG
NONE
OsAffx.23830.1.S1_at--668--3791NONE
CTGCTCGTTCAAAGTATTCCACTCG
NONE
OsAffx.23830.1.S1_at--231--91NONE
ATTCCACTCGCTAGGATCTTAGTAA
NONE
OsAffx.23830.1.S1_at--343--2251NONE
AAATAAGCTTGCTCTGACCTTCCTA
NONE
OsAffx.23830.1.S1_at--1137--8911NONE
TGACCTTCCTAGCTTTGAGAGCAAT
NONE
Target Sequence 
GAATGTTGATCTTCTGACCACGAAACTGAGCAAGAAGTCCATCCGATAGTGGGGGAGATCAAAAAGTACTTTTTTATGGG
CAGAGGTATAGCTATCAAGTAGAAGTCTTTCGCTGTGACTAGGGATAGACAGGAGATGATCCCTCGGTTCGTCTGAGCCG
GACCGGAGTCGAATACTTCGGATCCTGCATCTGCTTCAGTTGATTAGGTGCAAATGTGCCTTTTGGACCGATCCTACGAA
TAAGAGGCATTAATAAAGCATTTATGAGACACCATACTTTCAATAGGCAAGGGCCAGCCCGAAGATCAGCGGGATCTTTC
TCCAAGCTAAGTTTCGACCCCCGAGGGAACCGGCCACGATGCGTGGGGGTATCGGTGCTGATAAACTTGTCTCCGCTCGC
TCCCCTGCTCGTTCAAAGTATTCCACTCGCTAGGATCTTAGTAAATAAGCTTGCTCTGACCTTCCTAGCTTTGAGAGCAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis