Browse Element(s) Details


OsAffx.23878.1.S1_at

Description tigr:9629.m06011
TID=OsAffx.23878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6110011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23878.1.S1_at--464--3271Chr01:35694958..35694982 (25 bp)
CAACAACCTCAGCAGTATACCAGAC
LOC_Os01g61100
OsAffx.23878.1.S1_at--416--491Chr01:35695033..35695057 (25 bp)
ATCTGGCAATCATATCATACCTGTT
LOC_Os01g61100
OsAffx.23878.1.S1_at--637--3571Chr01:35695048..35695072 (25 bp)
CATACCTGTTTCAGACTGCTCAACT
LOC_Os01g61100
OsAffx.23878.1.S1_at--859--5711Chr01:35695061..35695085 (25 bp)
GACTGCTCAACTCTCAGGTTCAATA
LOC_Os01g61100
OsAffx.23878.1.S1_at--375--9631Chr01:35695074..35695098 (25 bp)
TCAGGTTCAATATCCTCTCAAGAAG
LOC_Os01g61100
OsAffx.23878.1.S1_at--506--4751Chr01:35695103..35695127 (25 bp)
GCTGAATTTGCTTCAAAAGGTGCCA
LOC_Os01g61100
OsAffx.23878.1.S1_at--526--5511Chr01:35695240..35695264 (25 bp)
GAACAATGCAAATTCAGCTTCAGAA
LOC_Os01g61100
OsAffx.23878.1.S1_at--895--1071Chr01:35695338..35695362 (25 bp)
AGGGAAGACCACAACAGCGATACAA
LOC_Os01g61100
OsAffx.23878.1.S1_at--976--5231Chr01:35695396..35695420 (25 bp)
GAATCACTATAGTCACTGTGGAAGA
LOC_Os01g61100
OsAffx.23878.1.S1_at--205--2191Chr01:35695428..35695452 (25 bp)
ACACATTTCCAAGCTGCCCATTGAA
LOC_Os01g61100
OsAffx.23878.1.S1_at--104--1591Chr01:35695439..35695463 (25 bp)
AGCTGCCCATTGAAACACATAGAGT
LOC_Os01g61100
Target Sequence 
CAACAACCTCAGCAGTATACCAGACAAATATATAATTCAGAGATGGAGAAAAAAAGAAGAAACATCAAAACTGAAATCTG
GCAATCATATCATACCTGTTTCAGACTGCTCAACTCTCAGGTTCAATATCCTCTCAAGAAGAAGTGCTGAATTTGCTTCA
AAAGGTGCCAAAACAACTAAATCATATGAGTTCATGATGCAACAATTTGATATGATTGATAAAGCTTGGAAAAATAGGAG
TCCAGAAGAGACAAGGCAACAGCAAAGCAGTACAGAAAACCAGAACAATGCAAATTCAGCTTCAGAAGTTGATCATGTTG
AAGTAGAAAATACAACAGTTAATGAACTTCAGATATTGGATCCAGAGATAGCAAAATCAAAGGGAAGACCACAACAGCGA
TACAAAACTATTAGGGAACAAATAGAAGAAAAACATGTGAATCACTATAGTCACTGTGGAAGAACAGATCACACATTTCC
AAGCTGCCCATTGAAACACATAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis