Browse Element(s) Details


OsAffx.23879.1.S1_at

Description tigr:9629.m06012
TID=OsAffx.23879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6111011/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23879.1.S1_at--665--10331Chr01:35697096..35697120 (25 bp)
TTTACACTTTTGGACATTCTTTGAA
LOC_Os01g61110
OsAffx.23879.1.S1_at--486--5511Chr01:35696868..35696892 (25 bp)
GAACAACTAGTGGTTGACCCAAGTT
LOC_Os01g61110
OsAffx.23879.1.S1_at--827--7911Chr01:35696857..35696881 (25 bp)
GGTTGACCCAAGTTTTGCTGATGCT
LOC_Os01g61110
OsAffx.23879.1.S1_at--647--10351Chr01:35696680..35696704 (25 bp)
TTTTTTCCCTATTCACTACCAACAG
LOC_Os01g61110
OsAffx.23879.1.S1_at--511--2151Chr01:35696659..35696683 (25 bp)
ACAGCATTGGTTCTTGTTCATTGTT
LOC_Os01g61110
OsAffx.23879.1.S1_at--817--1751Chr01:35696482..35696591 (25 bp)
ACCTGAAGACTTTTGTAGTTGACAA
LOC_Os01g61110
OsAffx.23879.1.S1_at--32--10331Chr01:35696406..35696430 (25 bp)
TTTCAAGACTGTTTTTCCTCCTGTC
LOC_Os01g61110
OsAffx.23879.1.S1_at--808--9271Chr01:35696388..35696412 (25 bp)
TCCTGTCCCTCGTCAAGATTATGAG
LOC_Os01g61110
OsAffx.23879.1.S1_at--20--231Chr01:35696244..35696268 (25 bp)
ATTTGGTCTCCAAGGATTCTTCTTC
LOC_Os01g61110
OsAffx.23879.1.S1_at--506--6571Chr01:35696230..35696254 (25 bp)
GATTCTTCTTCCTAATGAGTTCTCA
LOC_Os01g61110
OsAffx.23879.1.S1_at--376--6771Chr01:35696172..35696196 (25 bp)
GTTAACCAGATCTTTTTTCATGCAA
LOC_Os01g61110
Target Sequence 
TTTACACTTTTGGACATTCTTTGAAGAAAAGTGGTCATGAACAACTAGTGGTTGACCCAAGTTTTGCTGATGCTGAAAAA
GTTCAAAAATCTTTTGAAGGTGCTGCAAAGGCTAGGAGATTGGATTTGTGTGATATGCTTTTTTTCCCTATTCACTACCA
ACAGCATTGGTTCTTGTTCATTGTTGATGTCAAAGATAGAATGTTTGTTTTTGTAGACTCTAAACATGAGGAACATTCTG
AATTTTATGAAAACCTGAAGACTTTTGTAGTTGACAATTTTCAGAACTTGTGGAATAAGTTTGTTGGTAGTTCTTTGGAT
TTTAGTGTTTTCAAGACTGTTTTTCCTCCTGTCCCTCGTCAAGATTATGAGTCTGATTCTGGAGTATTTGTTATGAAATT
TATGGAAATTTGGTCTCCAAGGATTCTTCTTCCTAATGAGTTCTCAAAGCAAAACATCAACAATATCCGAGTGAAATATG
TTAACCAGATCTTTTTTCATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis