Browse Element(s) Details


OsAffx.23959.2.S1_at

Description tigr:9629.m06706
TID=OsAffx.23959.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OTU-like cysteine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6749011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23959.2.S1_at--388--9031Chr01:39543742..39543890 (25 bp)
TGCAGCCATCTCTTGAGAGGAATAC
LOC_Os01g67490
OsAffx.23959.2.S1_at--34--1671Chr01:39543739..39543887 (25 bp)
AGCCATCTCTTGAGAGGAATACAGA
LOC_Os01g67490
OsAffx.23959.2.S1_at--660--2251Chr01:39543490..39543514 (25 bp)
AAATATGCATACTTAGAATCCTGGT
LOC_Os01g67490
OsAffx.23959.2.S1_at--198--271Chr01:39543488..39543512 (25 bp)
ATATGCATACTTAGAATCCTGGTTC
LOC_Os01g67490
OsAffx.23959.2.S1_at--802--4951Chr01:39543484..39543508 (25 bp)
GCATACTTAGAATCCTGGTTCTGCA
LOC_Os01g67490
OsAffx.23959.2.S1_at--410--331Chr01:39543482..39543506 (25 bp)
ATACTTAGAATCCTGGTTCTGCAAA
LOC_Os01g67490
OsAffx.23959.2.S1_at--264--3591Chr01:39543479..39543503 (25 bp)
CTTAGAATCCTGGTTCTGCAAAAAC
LOC_Os01g67490
OsAffx.23959.2.S1_at--998--5231Chr01:39543475..39543499 (25 bp)
GAATCCTGGTTCTGCAAAAACATTT
LOC_Os01g67490
OsAffx.23959.2.S1_at--1098--551Chr01:39543473..39543497 (25 bp)
ATCCTGGTTCTGCAAAAACATTTGT
LOC_Os01g67490
OsAffx.23959.2.S1_at--28--3911Chr01:39543470..39543494 (25 bp)
CTGGTTCTGCAAAAACATTTGTATT
LOC_Os01g67490
OsAffx.23959.2.S1_at--1089--2391Chr01:39543458..39543482 (25 bp)
AAACATTTGTATTTTTAGATCATGG
LOC_Os01g67490
Target Sequence 
TGCAGCCATCTCTTGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGACAGTATCAAGATCC
TCTGCTACATGATTTCACAAACTGTATAGTGGTATTGTGACACATATGAAATGCTAGCCTGGCTTTACTGTTCCATATTT
CATATTTCAAGGCTGATGATAAATAAACTTCAGATGTGCAACTCTTCTTCCAACCAGAAATTGAATACATACCTGACATT
ATGTATAGAAAAAAATATGCATACTTAGAATCCTGGTTCTGCAAAAACATTTGTATTTTTAGATCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23959.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis