Browse Element(s) Details


OsAffx.24171.1.S1_at

Description tigr:9630.m00836
TID=OsAffx.24171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein
LOC_Os02g09240Os.54895.1.S1_x_at11/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09240Os.54895.1.S1_at10/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed
LOC_Os02g09260Os.53919.1.S1_at1/112+4768852..4771021Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24171.1.S1_at--690--4071Chr02:4747350..4747374 (25 bp)
CGAGATGGCGACGTGACGGGCGAGC
LOC_Os02g09230
OsAffx.24171.1.S1_at--482--4671Chr02:4747986..4748008 (23 bp)
GCGGGTGTTACAGCACCATGGCCGA
LOC_Os02g09230
OsAffx.24171.1.S1_at--129--8511Chr02:4748011..4748035 (25 bp)
TGGCACGCCGGCTGGACATACGCGC
LOC_Os02g09230
OsAffx.24171.1.S1_at--219--4271Chr02:4748018..4748042 (25 bp)
CCGGCTGGACATACGCGCCGCTGAT
LOC_Os02g09230
OsAffx.24171.1.S1_at--950--311Chr02:4748028..4748052 (25 bp)
ATACGCGCCGCTGATGTCACTCAGG
LOC_Os02g09230
OsAffx.24171.1.S1_at--94--4531Chr02:4748034..4748058 (25 bp)
GCCGCTGATGTCACTCAGGCTCAAT
LOC_Os02g09230
OsAffx.24171.1.S1_at--518--4751Chr02:4748037..4748061 (25 bp)
GCTGATGTCACTCAGGCTCAATCGG
LOC_Os02g09230
OsAffx.24171.1.S1_at--807--3051Chr02:4748056..4748080 (25 bp)
AATCGGCGAACTCCGCGTCGCGCGT
LOC_Os02g09230
OsAffx.24171.1.S1_at--785--4271Chr02:4748104..4748128 (25 bp)
CCTGCAGGGAGTTCACCAAGACGCA
LOC_Os02g09230
OsAffx.24171.1.S1_at--6--9051Chr02:4748106..4748130 (25 bp)
TGCAGGGAGTTCACCAAGACGCACG
LOC_Os02g09230
OsAffx.24171.1.S1_at--642--5891Chr02:4748156..4748180 (25 bp)
GAGCTCCACCGTCCGGGTCTTGATG
LOC_Os02g09230
Target Sequence 
CGAGATGGCGACGTGACGGGCGAGCGGCGACGGCGACGGCCGACGGCGACAGCGGTAGCGGCGGGTGTTACAGCACCATG
GCCGACCTGGCACGCCGGCTGGACATACGCGCCGCTGATGTCACTCAGGCTCAATCGGCGAACTCCGCGTCGCGCGTCGT
CGCCTCGTCCACCGACGCCGCCTGCAGGGAGTTCACCAAGACGCACGACGTCAAGTTCGCGACGCGGCCGTGGAGCTCCA
CCGTCCGGGTCTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis