Browse Element(s) Details


OsAffx.24215.1.S1_x_at

Description tigr:9630.m01165
TID=OsAffx.24215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to elongation factor 1-gamma (ef-1-gamma) (eef-1b gamma). (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1280011/11Elongation factor 1-gamma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12790Os.53733.1.S1_at10/112+6705768..6707433GATA zinc finger family protein, expressed
LOC_Os02g12800OsAffx.24215.1.S1_x_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S1_s_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S2_at9/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12810NANA2+6726340..6733254MAP3K delta-1 protein kinase, putative, expressed
LOC_Os02g12820OsAffx.12011.1.S1_at11/112+6747298..6749884Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0003746molecular_functiontranslation elongation factor activity
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24215.1.S1_x_at--506--5571Chr02:6724328..6724352 (25 bp)
GAAAGAGGCCCCAAAAGAAGCTCCA
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--455--1451Chr02:6724343..6724367 (25 bp)
AGAAGCTCCAAAGCCTAAGGCAGCT
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--6--2351Chr02:6724409..6724433 (25 bp)
AAAGAATCCTCTTGATTTGCTCCCT
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--23--3292Chr02:6724486..6724510 (25 bp)
CAAACTTCCGTGAGGTTGCTATCAA
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--33--2911Chr02:6725325..6725349 (25 bp)
AAGGTTACTCCCTGTGGTTCTGCGA
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--170--3992Chr02:6725374..6725398 (25 bp)
CGTGTCCTTCGTGACCATGAACAAG
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--752--2452Chr02:6725393..6725417 (25 bp)
AACAAGGTTGGTGGGTTCCTGCAGC
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--776--1292Chr02:6725451..6725475 (25 bp)
AGATGCTTGTGATCGGCTCTGAGCC
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--329--3772Chr02:6725467..6725491 (25 bp)
CTCTGAGCCGCCATTCAAGGTGAAG
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--850--6032Chr02:6725516..6725540 (25 bp)
GAGATCCCCAAGTTCGTCATGGATG
LOC_Os02g12800
OsAffx.24215.1.S1_x_at--1035--4632Chr02:6725607..6725631 (25 bp)
GCGTCAGCGCCATGATTGAGGACCT
LOC_Os02g12800
Target Sequence 
GAAAGAGGCCCCAAAAGAAGCTCCAAAGCCTAAGGCAGCTGAGAAACCAGAGGAGGAAGAGGAAGCACCAAAGCCAAAGC
CAAAGAATCCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAAAAACA
AACTTCCGTGAGGTTGCTATCAAGGGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTACAA
ATACAATGATGAGAACACCGTGTCCTTCGTGACCATGAACAAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCA
AATATGCCTTCGGGAAGATGCTTGTGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTGGCTCTTCCGTGGCCCC
GAGATCCCCAAGTTCGTCATGGATGAGGTCTACGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCAGATGAGGC
CCAGAAGGAGCGCGTCAGCGCCATGATTGAGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24215.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis