Browse Element(s) Details


OsAffx.24222.1.S1_at

Description tigr:9630.m01200
TID=OsAffx.24222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1309011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13090OsAffx.24222.1.S1_at11/112+6947845..6948648hypothetical protein
LOC_Os02g13100Os.26553.1.S1_s_at11/112+6956599..6959795protein phosphatase 2c, putative, expressed
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24222.1.S1_at--582--5931Chr02:6947875..6947899 (25 bp)
GAGCATCGGCTCAACGGCAAGGCAG
LOC_Os02g13090
OsAffx.24222.1.S1_at--69--7951Chr02:6948411..6948435 (25 bp)
GGATATTGTGGCTAGTGTGTCGTCA
LOC_Os02g13090
OsAffx.24222.1.S1_at--893--10071Chr02:6948423..6948447 (25 bp)
TAGTGTGTCGTCAACTCGCCAGAGT
LOC_Os02g13090
OsAffx.24222.1.S1_at--372--2551Chr02:6948435..6948459 (25 bp)
AACTCGCCAGAGTTCACCAATGTGC
LOC_Os02g13090
OsAffx.24222.1.S1_at--844--1211Chr02:6948445..6948469 (25 bp)
AGTTCACCAATGTGCGGGCCACCTT
LOC_Os02g13090
OsAffx.24222.1.S1_at--456--4311Chr02:6948466..6948490 (25 bp)
CCTTTCCCTAGGCAGTGCGATGGAG
LOC_Os02g13090
OsAffx.24222.1.S1_at--914--3211Chr02:6948523..6948547 (25 bp)
CAAGTGGAGGCCTACGACAGTGACA
LOC_Os02g13090
OsAffx.24222.1.S1_at--652--4291Chr02:6948533..6948557 (25 bp)
CCTACGACAGTGACAGGCAGGCGGA
LOC_Os02g13090
OsAffx.24222.1.S1_at--732--5011Chr02:6948571..6948595 (25 bp)
GGTCGTCGGTACAGTGGTTTCCATG
LOC_Os02g13090
OsAffx.24222.1.S1_at--839--9871Chr02:6948580..6948604 (25 bp)
TACAGTGGTTTCCATGCGCCGATGT
LOC_Os02g13090
OsAffx.24222.1.S1_at--145--10691Chr02:6948589..6948613 (25 bp)
TTCCATGCGCCGATGTTGGGTTGTT
LOC_Os02g13090
Target Sequence 
GAGCATCGGCTCAACGGCAAGGCAGTGGAGGCGATGGCTAGGACTCAAGGTGGTGGTGGAGGTCACAGCCGAGGCTGGAG
GTGGCAGTGGAGGCCACCACCAGCCCGCAGGTGGGATATTGTGGCTAGTGTGTCGTCAACTCGCCAGAGTTCACCAATGT
GCGGGCCACCTTTCCCTAGGCAGTGCGATGGAGGATGCTCAGGGGTTGCCAACGGTGATGACCCCCAAGTGGAGGCCTAC
GACAGTGACAGGCAGGCGGATGCTAGCTGGTGGGGTCGTCGGTACAGTGGTTTCCATGCGCCGATGTTGGGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis