Browse Element(s) Details


Os.26553.1.S1_s_at

Description gb:AK068836.1
DB_XREF= gi:32978861
TID=Os.26553.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159P20, full insert sequence.
FL= gb:AK068836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1310011/11protein phosphatase 2c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13090OsAffx.24222.1.S1_at11/112+6947845..6948648hypothetical protein
LOC_Os02g13100Os.26553.1.S1_s_at11/112+6956599..6959795protein phosphatase 2c, putative, expressed
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os02g13120OsAffx.24223.1.S1_x_at11/112+6976262..6976817expressed protein
LOC_Os02g13120OsAffx.24223.1.S1_at11/112+6976262..6976817expressed protein
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26553.1.S1_s_at--609--8371Chr02:6959365..6959389 (25 bp)
GGCGAGCTCGATATTGTCCGTGTTT
LOC_Os02g13100
Os.26553.1.S1_s_at--651--1591Chr02:6959369..6959393 (25 bp)
AGCTCGATATTGTCCGTGTTTTTGC
LOC_Os02g13100
Os.26553.1.S1_s_at--581--7311Chr02:6959413..6959437 (25 bp)
GTGCTGCAAATACCTACAACCTCCG
LOC_Os02g13100
Os.26553.1.S1_s_at--13--2651Chr02:6959448..6959472 (25 bp)
AACCAAATCCTAGCAATGGACCTGG
LOC_Os02g13100
Os.26553.1.S1_s_at--626--3191Chr02:6959461..6959485 (25 bp)
CAATGGACCTGGATATATGTGTGTC
LOC_Os02g13100
Os.26553.1.S1_s_at--914--8651Chr02:6959480..6959504 (25 bp)
TGTGTCCAGATTCATCGCTGGAATT
LOC_Os02g13100
Os.26553.1.S1_s_at--805--3531Chr02:6959492..6959516 (25 bp)
CATCGCTGGAATTTGACTCTTTTTT
LOC_Os02g13100
Os.26553.1.S1_s_at--1081--2331Chr02:6959642..6959666 (25 bp)
AAAGAAGCTGTTTTTACTTTTGATG
LOC_Os02g13100
Os.26553.1.S1_s_at--1076--8711Chr02:6959688..6959712 (25 bp)
TGTAATGGCTGAAGAATGGCAATCA
LOC_Os02g13100
Os.26553.1.S1_s_at--137--8231Chr02:6959705..6959729 (25 bp)
GGCAATCAGCCAATCTGATGTTGTT
LOC_Os02g13100
Os.26553.1.S1_s_at--450--731Chr02:6959722..6959746 (25 bp)
ATGTTGTTTGTGAGATACCAATTGC
LOC_Os02g13100
Target Sequence 
GGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATA
AAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTTGGA
CAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATT
GCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGA
TATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26553.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis