Browse Element(s) Details


Os.26551.1.S1_at

Description gb:AK099890.1
DB_XREF= gi:32985099
TID=Os.26551.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.26551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112P20, full insert sequence.
FL= gb:AK099890.1 gb:AK119200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1313011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13100Os.26553.1.S1_s_at11/112+6956599..6959795protein phosphatase 2c, putative, expressed
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os02g13120OsAffx.24223.1.S1_x_at11/112+6976262..6976817expressed protein
LOC_Os02g13120OsAffx.24223.1.S1_at11/112+6976262..6976817expressed protein
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26551.1.S1_at--478--2891Chr02:6984300..6984324 (25 bp)
AAGGGTCTGCTCCTCAGTCTGGATA
LOC_Os02g13130
Os.26551.1.S1_at--376--291Chr02:6984381..6984405 (25 bp)
ATAGTCAGGGCAGCTATGGCGCACC
LOC_Os02g13130
Os.26551.1.S1_at--799--9791Chr02:6984430..6984454 (25 bp)
TAACACTTCTCCTTACGGACAGGCG
LOC_Os02g13130
Os.26551.1.S1_at--630--7851Chr02:6984480..6984504 (25 bp)
GGTATGGCCAGTATGGTTACTCTCA
LOC_Os02g13130
Os.26551.1.S1_at--478--6771Chr02:6984495..6984519 (25 bp)
GTTACTCTCAGAACCAGCAAGGCTA
LOC_Os02g13130
Os.26551.1.S1_at--342--3491Chr02:6984564..6984588 (25 bp)
CAGGCTATGGTCAGCAGCAGTCCTA
LOC_Os02g13130
Os.26551.1.S1_at--278--5051Chr02:6984577..6984601 (25 bp)
GCAGCAGTCCTATGGTGATCCTTAT
LOC_Os02g13130
Os.26551.1.S1_at--933--4271Chr02:6984623..6984647 (25 bp)
CCTGCCGCATATTCTACTGAAGCTA
LOC_Os02g13130
Os.26551.1.S1_at--882--5971Chr02:6984740..6984764 (25 bp)
GAGAACAGTGGAGCCCAAAGCCCTG
LOC_Os02g13130
Os.26551.1.S1_at--931--2351Chr02:6984756..6984780 (25 bp)
AAAGCCCTGCTAGTTAAACCTGCAA
LOC_Os02g13130
Os.26551.1.S1_at--274--10791Chr02:6984840..6984864 (25 bp)
TTGTTGCTCCTTAATGTTGACTTGT
LOC_Os02g13130
Target Sequence 
AAGGGTCTGCTCCTCAGTCTGGATATGGGGCGCCACCACCACAGACTGGCTATGGTACCCAGCCCCAACCACAGGGAGGG
TATAGTCAGGGCAGCTATGGCGCACCTCCGCAGGGACAGAAGGCTCCTCCTAACACTTCTCCTTACGGACAGGCGCCGCC
TCCTGGATCTGCTCCTGGTGGGTATGGCCAGTATGGTTACTCTCAGAACCAGCAAGGCTATGGCGCACCTCCACCTTACC
CTGGTGCACCTGCTGCAAGCCACCCAGGCTATGGTCAGCAGCAGTCCTATGGTGATCCTTATGGCAGTGGAAGCTACGGG
CAGCCTGCCGCATATTCTACTGAAGCTACAACTGCTGCTGCCTCCCAGGACCAATCTGCTTCCGCCCCTGCGACTGGTGC
TGCGCCTGCGACAACCGCTGCTCCGGCACCTACTGCTCCTGAGAACAGTGGAGCCCAAAGCCCTGCTAGTTAAACCTGCA
ACTCAAGCTTTAAGCTTCTTTTAGAGAGGGGTTTCCGGATTTATGTGTTGAAATTGTTTTTTGTTGCTCCTTAATGTTGA
CTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis