Browse Element(s) Details


Os.8042.1.S1_at

Description gb:AF081923.1
DB_XREF= gi:3421414
TID=Os.8042.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8042 (NCBI UniGene Cluster)
DEF=Oryza sativa protein phosphatase 2A 55 kDa B regulatory subunit mRNA, complete cds.
PROD=protein phosphatase 2A 55 kDa B regulatorysubunit
FL= gb:AK101100.1 gb:AF081923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g131109/11Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13090OsAffx.24222.1.S1_at11/112+6947845..6948648hypothetical protein
LOC_Os02g13100Os.26553.1.S1_s_at11/112+6956599..6959795protein phosphatase 2c, putative, expressed
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os02g13120OsAffx.24223.1.S1_x_at11/112+6976262..6976817expressed protein
LOC_Os02g13120OsAffx.24223.1.S1_at11/112+6976262..6976817expressed protein
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0000166molecular_functionnucleotide binding
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8042.1.S1_at--311--6851NONE
GTTTGGTTGACGTGAAAGCCTTCTA
NONE
Os.8042.1.S1_at--466--10571Chr02:6964473..6964497 (25 bp)
TTCTACTTTCACATGCAACCAGGGA
LOC_Os02g13110
Os.8042.1.S1_at--238--2791Chr02:6964404..6964428 (25 bp)
AAGAGGCAGTCGGTTTCCACGAGAC
LOC_Os02g13110
Os.8042.1.S1_at--867--9691Chr02:6964368..6964390 (23 bp)
TCACTTGCGACAGTAGCAGGCTGCT
LOC_Os02g13110
Os.8042.1.S1_at--594--9031Chr02:6964347..6964371 (25 bp)
TGCTCCGTTCCGATTCTTTAGTAAA
LOC_Os02g13110
Os.8042.1.S1_at--23--6611Chr02:6964277..6964301 (25 bp)
GATTGTAGCTGCCTTGTAGCCAGAA
LOC_Os02g13110
Os.8042.1.S1_at--288--4751Chr02:6964217..6964241 (25 bp)
GCTGATGCTAATTTCACCGAAGGTC
LOC_Os02g13110
Os.8042.1.S1_at--804--2251Chr02:6964187..6964211 (25 bp)
AAATATCTGCTTAACAGGGCTGTAA
LOC_Os02g13110
Os.8042.1.S1_at--339--9991Chr02:6964116..6964140 (25 bp)
TAGCCAGGGCTAACAACCATCTCTT
LOC_Os02g13110
Os.8042.1.S1_at--362--1731Chr02:6964101..6964125 (25 bp)
ACCATCTCTTGTCATGGACATCCAA
LOC_Os02g13110
Os.8042.1.S1_at--929--10291NONE
TTTCCTCCCCTGTTCATTCAATAAT
NONE
Target Sequence 
GTTTGGTTGACGTGAAAGCCTTCTACTTTCACATGCAACCAGGGAGATGGTGCAAAGGACATTGTTGTCAATTTCATGAC
TGGGGCCAAAAGAGGCAGTCGGTTTCCACGAGACCACTCCCGATGCTCACTTGCGACAGTAGCAGGCTGCTCCGTTCCGA
TTCTTTAGTAAATGTTAAATATATCTAATCATATCAACATTTTTGGTCCCAAGATATGATTGTAGCTGCCTTGTAGCCAG
AATCAGCAGTTGAAAGATAAAGCAGNAGATAGGCGATGCTGATGCTAATTTCACCGAAGGTCACAGAAAAATATCTGCTT
AACAGGGCTGTAAGATTTTTTTTTCTTTTCTTTTTCATTTCNTCACATGTAATGCCACCTAGCCAGGGCTAACAACCATC
TCTTGTCATGGACATCCAAATCTTTGNACATAAAATTTTACTACAGTTATTGNTAGCTAATCTTTCCTCCCCTGTTCATT
CAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis