Browse Element(s) Details


OsAffx.24223.1.S1_x_at

Description tigr:9630.m01204
TID=OsAffx.24223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1312011/11expressed protein
LOC_Os05g035002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13100Os.26553.1.S1_s_at11/112+6956599..6959795protein phosphatase 2c, putative, expressed
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os02g13120OsAffx.24223.1.S1_x_at11/112+6976262..6976817expressed protein
LOC_Os02g13120OsAffx.24223.1.S1_at11/112+6976262..6976817expressed protein
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24223.1.S1_x_at--1075--1211Chr02:6976292..6976316 (25 bp)
AGTTCAGAGAGCGAGCCATCGGAAG
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--460--6751Chr02:6976293..6976317 (25 bp)
GTTCAGAGAGCGAGCCATCGGAAGA
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--792--10332Chr02:6976330..6976354 (25 bp)
TTTAATTTTGATCACCGCACTCACG
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--855--2012Chr02:6976348..6976372 (25 bp)
ACTCACGGGATTCATTTGCAGAAGT
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--601--7811Chr02:6976377..6976401 (25 bp)
GGTCTTTTTGTCATCCAGTCTGTGG
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--386--7151Chr02:6976378..6976402 (25 bp)
GTCTTTTTGTCATCCAGTCTGTGGC
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--624--10251Chr02:6976383..6976407 (25 bp)
TTTGTCATCCAGTCTGTGGCTGCAA
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--673--8731Chr02:6976385..6976409 (25 bp)
TGTCATCCAGTCTGTGGCTGCAAGC
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--364--9231Chr02:6976390..6976414 (25 bp)
TCCAGTCTGTGGCTGCAAGCCTGAG
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--437--1091Chr02:6976726..6976746 (21 bp)
AGTGAGGAATGGGTTATGGCAGTTT
LOC_Os02g13120
OsAffx.24223.1.S1_x_at--751--1791Chr02:6976763..6976787 (25 bp)
ACCGCAACAATTTATCGAAGGTATG
LOC_Os02g13120
Target Sequence 
AGTTCAGAGAGCGAGCCATCGGAAGAGTCTGTCATGGATTTAATTTTGATCACCGCACTCACGGGATTCATTTGCAGAAG
TTCAGGGTCTTTTTGTCATCCAGTCTGTGGCTGCAAGCCTGAGGCTCAGATGGGAAGTGAGGAATGGGTTATGGCAGTTT
GTAGAACTATTTGGTTACCGCAACAATTTATCGAAGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24223.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis