Browse Element(s) Details


OsAffx.24232.2.S1_s_at

Description tigr:9630.m01266
TID=OsAffx.24232.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1371011/11AP2 domain containing protein, expressed
LOC_Os08g393601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13700OsAffx.12023.1.S1_at10/112+7348539..7349632hypothetical protein
LOC_Os02g13710OsAffx.24232.2.S1_s_at11/112+7365310..7366400AP2 domain containing protein, expressed
LOC_Os02g13720OsAffx.12024.1.S1_at11/112+7381950..7382180hypothetical protein
LOC_Os02g13730Os.46012.2.S1_x_at4/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.46012.3.S1_x_at2/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.27088.1.A1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.54691.1.S1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24232.2.S1_s_at--437--5851Chr02:7366003..7366027 (25 bp)
GACCACCATGGATGGGCCCAGTCGG
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--747--3451Chr02:7366021..7366045 (25 bp)
CAGTCGGTTGGTGCCCTCTTATGGA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--105--8611Chr02:7366029..7366053 (25 bp)
TGGTGCCCTCTTATGGAACCTGTGA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--666--2151Chr02:7366100..7366124 (25 bp)
ACAGCTCTAGCTTCTTTAATTTTAA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--94--10371Chr02:7366134..7366158 (25 bp)
TTTTTTCCAGCTTCCTAAATCTGTA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--463--9551Chr02:7366193..7366217 (25 bp)
TCTTTTTTCAGGCAGGCTTAATATA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--107--4191Chr02:7366238..7366262 (25 bp)
CCCTTTCGTTTCAAGTGTCCTGTAG
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--971--2853Chr02:7366250..7366274 (25 bp)
AAGTGTCCTGTAGCTTTGCCTTTTT
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--904--8311Chr02:7366286..7366310 (25 bp)
GGCTCTTGTCTTCTGAATTTGTCTT
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--870--1091Chr02:7366322..7366346 (25 bp)
AGTGGCTCTACCTGCAGAGTGTCAA
LOC_Os02g13710
OsAffx.24232.2.S1_s_at--751--6111Chr02:7366338..7366362 (25 bp)
GAGTGTCAACTAAGCTAAGTCATTA
LOC_Os02g13710
Target Sequence 
GACCACCATGGATGGGCCCAGTCGGTTGGTGCCCTCTTATGGAACCTGTGATTCGATCATAATAATAATTAATCTCTAAT
TAATTACCAAGTAATTAACAGCTCTAGCTTCTTTAATTTTAATCTCTCCTTTTTTTTCCAGCTTCCTAAATCTGTACATA
GGTTTCCAGTTTTTTTTCTTCTTTTTTTAATCTTTTTTCAGGCAGGCTTAATATATATTTCTGCTTGATTTTTTCCCCTT
TCGTTTCAAGTGTCCTGTAGCTTTGCCTTTTTGTTCAGTTTGGGGCTCTTGTCTTCTGAATTTGTCTTCCCTCTTGCCTA
GTGGCTCTACCTGCAGAGTGTCAACTAAGCTAAGTCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24232.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis