Browse Element(s) Details


OsAffx.24260.1.S1_at

Description tigr:9630.m01382
TID=OsAffx.24260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1482011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24260.1.S1_at--707--4431Chr02:8234573..8234597 (25 bp)
GCCATCTCCCTGTCATATATGATTC
LOC_Os02g14820
OsAffx.24260.1.S1_at--829--7131Chr02:8234562..8234586 (25 bp)
GTCATATATGATTCTCACCATCTAT
LOC_Os02g14820
OsAffx.24260.1.S1_at--1078--91Chr02:8234036..8234060 (25 bp)
ATTTTAATGGTGTTGTCGAGGGCTT
LOC_Os02g14820
OsAffx.24260.1.S1_at--611--7211Chr02:8234022..8234046 (25 bp)
GTCGAGGGCTTGGTATCTCCGGCAT
LOC_Os02g14820
OsAffx.24260.1.S1_at--629--8291Chr02:8234016..8234040 (25 bp)
GGCTTGGTATCTCCGGCATGATATA
LOC_Os02g14820
OsAffx.24260.1.S1_at--480--4991Chr02:8234001..8234025 (25 bp)
GCATGATATAGTGCAGTGCCGCGGT
LOC_Os02g14820
OsAffx.24260.1.S1_at--467--1551Chr02:8233927..8233951 (25 bp)
AGCTTGAAGCGCCTGGCACAGCAGT
LOC_Os02g14820
OsAffx.24260.1.S1_at--854--1651Chr02:8233920..8233944 (25 bp)
AGCGCCTGGCACAGCAGTGGTCTGC
LOC_Os02g14820
OsAffx.24260.1.S1_at--117--5511Chr02:8233880..8233904 (25 bp)
GAACAACAGCGCTCGGCGGAGACAG
LOC_Os02g14820
OsAffx.24260.1.S1_at--426--5291Chr02:8233781..8233805 (25 bp)
GAATGGTGGCGCATAGTTGGTCATC
LOC_Os02g14820
OsAffx.24260.1.S1_at--634--3571Chr02:8233770..8233794 (25 bp)
CATAGTTGGTCATCGAGGCGGAGAT
LOC_Os02g14820
Target Sequence 
GCCATCTCCCTGTCATATATGATTCTCACCATCTATTTCATATATGCAGATGAACAAGATAGGATTTTAATGGTGTTGTC
GAGGGCTTGGTATCTCCGGCATGATATAGTGCAGTGCCGCGGTGGAGAGGGATCTGGTGGAGAAGGGGGCGGCGGCGGAG
GGGTGGCGGTGGAGCTTGAAGCGCCTGGCACAGCAGTGGTCTGCGTGGGGCGGCGGAGGGAACAACAGCGCTCGGCGGAG
ACAGGTGGTGGCGGTGGCACAGAGACGGTCGAGGAGAGATCGGGGGCGACGCGGAGGAGGACTAGAGGGAGTTGCGAGGA
ATGGTGGCGCATAGTTGGTCATCGAGGCGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis