Browse Element(s) Details


OsAffx.24345.1.S1_x_at

Description tigr:9630.m01949
TID=OsAffx.24345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20340OsAffx.12130.1.S1_at11/112+11977068..11980261hypothetical protein
LOC_Os02g20350Os.2436.1.S1_at1/112+11988332..11992855transposon protein, putative, unclassified
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g20370OsAffx.24345.1.S1_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.24345.1.S1_x_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.13996.1.S1_x_at1/112+12004894..12005217hypothetical protein
LOC_Os02g20380Os.7532.1.S1_at11/112+12009030..12015471expressed protein
LOC_Os02g20394OsAffx.12131.1.S1_at11/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20394Os.53015.1.S1_at10/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20410Os.25204.1.S1_at11/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20410Os.5767.1.S1_at1/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24345.1.S1_x_at--332--4151Chr02:12004927..12004951 (25 bp)
CGCCTCCCCGCGGAAGACAACGACG
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--950--3991Chr02:12004958..12004982 (25 bp)
CGTCCGTCTCCGGTAGTAGCGCTGA
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--328--9291Chr02:12004960..12004984 (25 bp)
TCCGTCTCCGGTAGTAGCGCTGACA
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--200--7171Chr02:12004963..12004987 (25 bp)
GTCTCCGGTAGTAGCGCTGACACTG
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--1047--9491Chr02:12004964..12004988 (25 bp)
TCTCCGGTAGTAGCGCTGACACTGA
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--929--4251Chr02:12004967..12004991 (25 bp)
CCGGTAGTAGCGCTGACACTGATGA
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--634--7851Chr02:12004969..12004993 (25 bp)
GGTAGTAGCGCTGACACTGATGAAC
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--1061--6931Chr02:12004970..12004994 (25 bp)
GTAGTAGCGCTGACACTGATGAACA
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--663--4571Chr02:12004976..12005000 (25 bp)
GCGCTGACACTGATGAACACCGTGG
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--650--2451Chr02:12004991..12005015 (25 bp)
AACACCGTGGCCTGAAGGTGGCCCT
LOC_Os02g20370
OsAffx.24345.1.S1_x_at--690--8871Chr02:12005075..12005099 (25 bp)
TGATGGAGGCCGTCAGGCTGGAGGA
LOC_Os02g20370
Target Sequence 
CGCCTCCCCGCGGAAGACAACGACGCGCCGGCGTCCGTCTCCGGTAGTAGCGCTGACACTGATGAACACCGTGGCCTGAA
GGTGGCCCTGCGGCATCGGGGAAGGAGGTCAGGGCGGCAAGGAGGATGGGGGAAGGCCAGCGCGGCGGTGATGGAGGCCG
TCAGGCTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24345.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis