Browse Element(s) Details


Os.7989.1.S1_at

Description gb:CB618033
DB_XREF= gi:29613020
DB_XREF=OSIIEa01J23.r
CLONE=OSIIEa01J23
TID=Os.7989.1
CNT=28
FEA=EST
TIER=Stack
STK=11
UG=Os.7989 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179650.1 (A.thaliana) putative tyrosine aminotransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g203609/11tyrosine/nicotianamine aminotransferases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20330OsAffx.17471.1.S1_at11/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.3.S1_s_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_x_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.2.S1_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_at4/112+11969198..11976032hypothetical protein
LOC_Os02g20340OsAffx.12130.1.S1_at11/112+11977068..11980261hypothetical protein
LOC_Os02g20350Os.2436.1.S1_at1/112+11988332..11992855transposon protein, putative, unclassified
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g20370OsAffx.24345.1.S1_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.24345.1.S1_x_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.13996.1.S1_x_at1/112+12004894..12005217hypothetical protein
LOC_Os02g20380Os.7532.1.S1_at11/112+12009030..12015471expressed protein
LOC_Os02g20394OsAffx.12131.1.S1_at11/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20394Os.53015.1.S1_at10/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20410Os.25204.1.S1_at11/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20410Os.5767.1.S1_at1/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7989.1.S1_at--571--6831Chr02:11999485..11999509 (25 bp)
GTTTCAACTGATCCAGCAACTTTCA
LOC_Os02g20360
Os.7989.1.S1_at--750--5151NONE
GCAACTTTCATTCAGGGAGCTCTAC
NONE
Os.7989.1.S1_at--418--3471Chr02:11998911..11998934 (24 bp)
CAGGGAGCTCTACCGAATATTCTTA
LOC_Os02g20360
Os.7989.1.S1_at--483--10491Chr02:11998802..11998826 (25 bp)
TTAAATGCATCACTTGTCCTCACAA
LOC_Os02g20360
Os.7989.1.S1_at--63--2671Chr02:11998779..11998803 (25 bp)
AAGCCCGAAGGATCCATGTTTGTGA
LOC_Os02g20360
Os.7989.1.S1_at--567--5331Chr02:11998411..11998435 (25 bp)
GAAGAGTCGGTGATTCTTTGCCCAG
LOC_Os02g20360
Os.7989.1.S1_at--666--6571NONE
GATTCTTTGCCCAGGGAGTGTGCTG
NONE
Os.7989.1.S1_at--1025--3151Chr02:11997339..11997363 (25 bp)
AATTGGGTTCGCATTACTTTTGCTA
LOC_Os02g20360
Os.7989.1.S1_at--296--10731Chr02:11997320..11997344 (25 bp)
TTGCTATTGATTCATCTTCTCTCCT
LOC_Os02g20360
Os.7989.1.S1_at--48--6171Chr02:11997283..11997307 (25 bp)
GAGGATCAAATCCTTCTGCCAAAGG
LOC_Os02g20360
Os.7989.1.S1_at--211--7311Chr02:11997183..11997207 (25 bp)
GTGCTTTATACCTGTTGTCACCAAA
LOC_Os02g20360
Target Sequence 
GTTTCAACTGATCCAGCAACTTTCATTCAGGGAGCTCTACCGAATATTCTTAAGAATACCAAGGAAGAATTCTTTAAGAG
GATAATTGATTTGCTTACGGAAACATCAGATATTTGCTATAGAGGAATAAAGGATATTAAATGCATCACTTGTCCTCACA
AGCCCGAAGGATCCATGTTTGTGATGGTGAAATTGAACCTATATCTTTTGGAGGGAATCCATGATGATGTTGATTTTTGT
TGCCAACTTGCGAAAGAAGAGTCGGTGATTCTTTGCCCAGGGAGTGTGCTGGGAATGAAGAATTGGGTTCGCATTACTTT
TGCTATTGATTCATCTTCTCTCCTGGATGGTCTTGAGAGGATCAAATCCTTCTGCCAAAGGCACAAGAAGAAAAACCCTT
TAAATTATATCTAGATTGTACTAGGATTGGAATGATCAGTACTAATTGTGATGTTTGTGCTTTATACCTGTTGTCACCAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis