Browse Element(s) Details


OsAffx.17471.1.S1_at

Description tigr:9636.m04293
TID=OsAffx.17471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2033011/11hypothetical protein
LOC_Os08g4221011/11cation exchanger, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20280Os.35591.1.S1_a_at10/112+11944393..11949977expressed protein
LOC_Os02g20280OsAffx.19018.1.S1_x_at1/112+11944393..11949977expressed protein
LOC_Os02g20290OsAffx.12130.1.S1_at11/112+11950752..11953945hypothetical protein
LOC_Os02g20300OsAffx.29629.1.S1_at11/112+11958562..11960588hypothetical protein
LOC_Os02g20310Os.8731.2.S1_s_at11/112+11961692..11967963HEAT repeat family protein, expressed
LOC_Os02g20320OsAffx.17472.1.S1_at5/112+11968301..11968732Auxin responsive protein
LOC_Os02g20330OsAffx.17471.1.S1_at11/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.3.S1_s_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_x_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.2.S1_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_at4/112+11969198..11976032hypothetical protein
LOC_Os02g20340OsAffx.12130.1.S1_at11/112+11977068..11980261hypothetical protein
LOC_Os02g20350Os.2436.1.S1_at1/112+11988332..11992855transposon protein, putative, unclassified
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17471.1.S1_at--502--9592Chr08:26528573..26528597 (25 bp)
TCATCCGGGTCACCTAAAATATTGT
LOC_Os08g42210
OsAffx.17471.1.S1_at--924--3532Chr08:26528574..26528598 (25 bp)
CATCCGGGTCACCTAAAATATTGTA
LOC_Os08g42210
OsAffx.17471.1.S1_at--634--9272Chr08:26528576..26528600 (25 bp)
TCCGGGTCACCTAAAATATTGTAAT
LOC_Os08g42210
OsAffx.17471.1.S1_at--371--7692Chr08:26528579..26528603 (25 bp)
GGGTCACCTAAAATATTGTAATTGG
LOC_Os08g42210
OsAffx.17471.1.S1_at--884--7072Chr08:26528596..26528620 (25 bp)
GTAATTGGTGTTGTTTGAGACTGAC
LOC_Os08g42210
OsAffx.17471.1.S1_at--159--9752Chr08:26528597..26528621 (25 bp)
TAATTGGTGTTGTTTGAGACTGACT
LOC_Os08g42210
OsAffx.17471.1.S1_at--403--32Chr08:26528599..26528623 (25 bp)
ATTGGTGTTGTTTGAGACTGACTGA
LOC_Os08g42210
OsAffx.17471.1.S1_at--558--8612Chr08:26528601..26528625 (25 bp)
TGGTGTTGTTTGAGACTGACTGATT
LOC_Os08g42210
OsAffx.17471.1.S1_at--557--6852Chr08:26528608..26528632 (25 bp)
GTTTGAGACTGACTGATTGAGTTTT
LOC_Os08g42210
OsAffx.17471.1.S1_at--449--5992Chr08:26528612..26528636 (25 bp)
GAGACTGACTGATTGAGTTTTGTAT
LOC_Os08g42210
OsAffx.17471.1.S1_at--615--1392Chr08:26528613..26528637 (25 bp)
AGACTGACTGATTGAGTTTTGTATT
LOC_Os08g42210
Target Sequence 
TCATCCGGGTCACCTAAAATATTGTAATTGGTGTTGTTTGAGACTGACTGATTGAGTTTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis