Browse Element(s) Details


Os.8731.2.S1_s_at

Description gb:AK101015.1
DB_XREF= gi:32986224
TID=Os.8731.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149C09, full insert sequence.
FL= gb:AK101015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4218911/11HEAT repeat family protein, expressed
LOC_Os08g4226811/11HEAT repeat family protein, expressed
LOC_Os02g2031011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42140NANA8+26493420..26499236retrotransposon protein, putative, unclassified
LOC_Os08g42150NANA8+26507630..26508224hypothetical protein
LOC_Os08g42160NANA8+26508920..26512903retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42170NANA8+26513991..26514314Zinc transporter 2 precursor, putative
LOC_Os08g42180NANA8+26515000..26515683hypothetical protein
LOC_Os08g42189Os.8731.2.S1_s_at11/118+26519312..26522945HEAT repeat family protein, expressed
LOC_Os08g42198OsAffx.17472.1.S1_at11/118+26523376..26523997Auxin responsive protein, expressed
LOC_Os08g42210OsAffx.17471.1.S1_at11/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.3.S1_s_at9/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_x_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.2.S1_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_at4/118+26524273..26531101cation exchanger, putative
LOC_Os08g42220OsAffx.12130.1.S1_at11/118+26532138..26535329hypothetical protein
LOC_Os08g42230Os.10827.1.S1_x_at11/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42230Os.46055.2.S1_x_at6/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42240NANA8+26539843..26540422hypothetical protein
LOC_Os08g42250OsAffx.25936.1.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.7.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.1.S1_at7/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.2.S1_x_at4/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.5.S1_x_at3/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8731.2.S1_s_at--230--9093Chr08:26560797..26560821 (25 bp)
TGCTACCTCACCTGATGCTGATGCT
LOC_Os08g42268
Os.8731.2.S1_s_at--899--5153Chr08:26560834..26560858 (25 bp)
GAATCATGGGAAGCTTTCTGCCAAT
LOC_Os08g42268
Os.8731.2.S1_s_at--784--2333Chr08:26560860..26560884 (25 bp)
AAAGCTTTCCCCATTAAGTGCACAG
LOC_Os08g42268
Os.8731.2.S1_s_at--90--2873Chr08:26560875..26560899 (25 bp)
AAGTGCACAGGCAATCCTTCGTGTC
LOC_Os08g42268
Os.8731.2.S1_s_at--503--2953Chr08:26560955..26560979 (25 bp)
AAGGCGTCACTGTTGGTTGCTAGCA
LOC_Os08g42268
Os.8731.2.S1_s_at--564--8873Chr08:26561000..26561024 (25 bp)
TGAGGTTGTGGTTTTTCCATCCGAT
LOC_Os08g42268
Os.8731.2.S1_s_at--798--553Chr08:26561018..26561042 (25 bp)
ATCCGATTCACCTTTTGCTGTACAT
LOC_Os08g42268
Os.8731.2.S1_s_at--1016--3493Chr08:26561040..26561064 (25 bp)
CATGGTTATGGTTGTTCTTTCTCTA
LOC_Os08g42268
Os.8731.2.S1_s_at--465--10573Chr08:26561054..26561078 (25 bp)
TTCTTTCTCTACATCCAATCTGGGA
LOC_Os08g42268
Os.8731.2.S1_s_at--37--7933Chr08:26561076..26561100 (25 bp)
GGATTCGTTCGTTAAGCATCGGTTC
LOC_Os08g42268
Os.8731.2.S1_s_at--971--10313Chr08:26561177..26561201 (25 bp)
TTTCTCCCACTGCTTGGTATTGATT
LOC_Os08g42268
Target Sequence 
TGCTACCTCACCTGATGCTGATGCTGATGCTGGTGCTGAATCATGGGAAGCTTTCTGCCAATCAAAGCTTTCCCCATTAA
GTGCACAGGCAATCCTTCGTGTCACCTCTACGACGAAAGAGGGTGTGGCTGTGGGTGTCACCTCTACCCCTCCGAAAGAA
GGCGTCACTGTTGGTTGCTAGCATCAGGAGGTAGTAGATGCAATGAGGTTGTGGTTTTTCCATCCGATTCACCTTTTGCT
GTACATGGTTATGGTTGTTCTTTCTCTACATCCAATCTGGGATTCGTTCGTTAAGCATCGGTTCGAGAGTTGAGGTGTGA
CCTGTGGGTGTTAATATTGGTGCGAGATATACCTGTTATAGTTGACCGTATGATCTTCCTTTTCTCCCACTGCTTGGTAT
TGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8731.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis