Browse Element(s) Details


OsAffx.12130.1.S1_at

Description tigr:9636.m04294
TID=OsAffx.12130.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2029011/11hypothetical protein
LOC_Os08g4222011/11hypothetical protein
LOC_Os02g2034011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20250Os.53142.1.S1_at3/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_x_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.2.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.5.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20270Os.18239.1.S1_at10/112+11935197..11941762expressed protein
LOC_Os02g20280Os.35591.1.S1_a_at10/112+11944393..11949977expressed protein
LOC_Os02g20280OsAffx.19018.1.S1_x_at1/112+11944393..11949977expressed protein
LOC_Os02g20290OsAffx.12130.1.S1_at11/112+11950752..11953945hypothetical protein
LOC_Os02g20300OsAffx.29629.1.S1_at11/112+11958562..11960588hypothetical protein
LOC_Os02g20310Os.8731.2.S1_s_at11/112+11961692..11967963HEAT repeat family protein, expressed
LOC_Os02g20320OsAffx.17472.1.S1_at5/112+11968301..11968732Auxin responsive protein
LOC_Os02g20330OsAffx.17471.1.S1_at11/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.3.S1_s_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_x_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.2.S1_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_at4/112+11969198..11976032hypothetical protein
LOC_Os02g20340OsAffx.12130.1.S1_at11/112+11977068..11980261hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12130.1.S1_at--143--1454Chr08:26533036..26533060 (25 bp)
AGAACCGCGAGATCTGGAGCACCCA
LOC_Os08g42220
OsAffx.12130.1.S1_at--953--1973Chr08:26533010..26533034 (25 bp)
ACTCGATACGGCTGGATCCGTGGTT
LOC_Os08g42220
OsAffx.12130.1.S1_at--943--9513Chr08:26532964..26532988 (25 bp)
TCTAGAGGTTCTGAGCTTGGGCCTT
LOC_Os08g42220
OsAffx.12130.1.S1_at--879--7394Chr08:26532878..26532902 (25 bp)
GTGATGGTCGGCTGCATCTTGCCGA
LOC_Os08g42220
OsAffx.12130.1.S1_at--1093--5794Chr08:26532827..26532851 (25 bp)
GACCCGCCGTTCGTCGAAGGTATCG
LOC_Os08g42220
OsAffx.12130.1.S1_at--170--5314Chr08:26532812..26532836 (25 bp)
GAAGGTATCGCACAGGCGCTCGCCA
LOC_Os08g42220
OsAffx.12130.1.S1_at--32--3014Chr08:26532544..26532568 (25 bp)
AATCTAGCGGCCCACAGGGTAGCTC
LOC_Os08g42220
OsAffx.12130.1.S1_at--1102--1055Chr11:18751331..18751351 (21 bp)
AGGGTAGCTCTCAAGTCTGGTAGAA
NONE
OsAffx.12130.1.S1_at--967--9433Chr08:26532222..26532246 (25 bp)
TCGGACTTCAGATGGCGAGGATTCG
LOC_Os08g42220
OsAffx.12130.1.S1_at--965--5893Chr08:26532194..26532218 (25 bp)
GAGCTGTGCTCCATCAAGTCGGACA
LOC_Os08g42220
OsAffx.12130.1.S1_at--376--373Chr08:26532182..26532206 (25 bp)
ATCAAGTCGGACAGCCCCAGGGACG
LOC_Os08g42220
Target Sequence 
AGAACCGCGAGATCTGGAGCACCCACACTCGATACGGCTGGATCCGTGGTTCCCAGGGTTGGGGCATCCAGATCTAGAGG
TTCTGAGCTTGGGCCTTGGGGTGGCTAGCACCGGCAGTGGAGGGGATGGTGGAAGCTCGTCGCCGGCAGGAGATGGTGGT
GATGGTCGGCTGCATCTTGCCGATGGCGCTGGGCGGAGGCTCGGTAGCCGACCCGCCGTTCGTCGAAGGTATCGCACAGG
CGCTCGCCATGNGGATCTGGAGAGAATAGAGGGGCGGCGACGGCTCGAGGGAAATCTAGCGGCCCACAGGGTAGCTCTCA
AGTCTGGTAGAAAGAAGGGCACCGGGGAGCAGCATGGAGGTGAAGATCTNCCACCGATGTATCTGGACATAGACGACTTG
ATCATNACTCGGACTTCAGATGGCGAGGATTCGGACGAGCTGTGCTCCATCAAGTCGGACAGCCCCAGGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis