Browse Element(s) Details


OsAffx.29629.1.S1_at

Description tigr:9636.m04297
TID=OsAffx.29629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4229911/11hypothetical protein
LOC_Os02g2030011/11hypothetical protein
LOC_Os08g4225911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42259OsAffx.29629.1.S1_at11/118+26551973..26553999hypothetical protein
LOC_Os08g42268Os.8731.2.S1_s_at11/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42268OsAffx.19018.1.S1_x_at1/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42277OsAffx.17472.1.S1_at5/118+26561695..26562126Auxin responsive protein
LOC_Os08g42290Os.52313.1.S1_x_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42290Os.52313.1.S1_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42299OsAffx.29629.1.S1_at11/118+26571876..26573902hypothetical protein
LOC_Os08g42310Os.54053.1.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42310Os.54053.2.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29629.1.S1_at--707--1253Chr08:26573123..26573147 (25 bp)
AGATAATTACTTACCTCGACCTACT
LOC_Os08g42299
OsAffx.29629.1.S1_at--88--133Chr08:26573118..26573142 (25 bp)
ATTACTTACCTCGACCTACTTCAAG
LOC_Os08g42299
OsAffx.29629.1.S1_at--86--9373Chr08:26573108..26573132 (25 bp)
TCGACCTACTTCAAGCAATCTCAAC
LOC_Os08g42299
OsAffx.29629.1.S1_at--796--5193Chr08:26573094..26573118 (25 bp)
GCAATCTCAACACCACAATTCTCTG
LOC_Os08g42299
OsAffx.29629.1.S1_at--232--3753Chr08:26573089..26573113 (25 bp)
CTCAACACCACAATTCTCTGCAGGG
LOC_Os08g42299
OsAffx.29629.1.S1_at--922--5013Chr08:26572872..26572894 (23 bp)
GCAGGGATTGAACTTAGCCGCTTCT
LOC_Os08g42299
OsAffx.29629.1.S1_at--879--7913Chr08:26572868..26572892 (25 bp)
GGATTGAACTTAGCCGCTTCTTAGA
LOC_Os08g42299
OsAffx.29629.1.S1_at--117--2533Chr08:26572862..26572886 (25 bp)
AACTTAGCCGCTTCTTAGAGGAAAG
LOC_Os08g42299
OsAffx.29629.1.S1_at--449--7994Chr08:26572214..26572233 (20 bp)
GGATGAGTGTATTTGTCAACCCAGA
LOC_Os08g42299
OsAffx.29629.1.S1_at--978--7334Chr08:26572201..26572225 (25 bp)
TGTCAACCCAGAGAAAACCCAGCGT
LOC_Os08g42299
OsAffx.29629.1.S1_at--500--2614Chr08:26571906..26572210 (25 bp)
AACCCAGCGTATTATGATGTATGAG
LOC_Os08g42299
Target Sequence 
AGATAATTACTTACCTCGACCTACTTCAAGCAATCTCAACACCACAATTCTCTGCAGGGGCAGGGATTGAACTTAGCCGC
TTCTTAGAGGAAAGAAGCAAATTTCAGAAATCACAAAAACTGAGGATGAGTGTATTTGTCAACCCAGAGAAAACCCAGCG
TATTATGATGTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis