Browse Element(s) Details


Os.54053.1.S1_at

Description gb:AK101573.1
DB_XREF= gi:32986782
TID=Os.54053.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050J16, full insert sequence.
FL= gb:AK101573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4231011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42259OsAffx.29629.1.S1_at11/118+26551973..26553999hypothetical protein
LOC_Os08g42268Os.8731.2.S1_s_at11/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42268OsAffx.19018.1.S1_x_at1/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42277OsAffx.17472.1.S1_at5/118+26561695..26562126Auxin responsive protein
LOC_Os08g42290Os.52313.1.S1_x_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42290Os.52313.1.S1_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42299OsAffx.29629.1.S1_at11/118+26571876..26573902hypothetical protein
LOC_Os08g42310Os.54053.1.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42310Os.54053.2.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54053.1.S1_at--918--971Chr08:26579165..26579189 (25 bp)
AGGATGTAATTACTCACCCAGCCAC
LOC_Os08g42310
Os.54053.1.S1_at--310--7411Chr08:26579214..26579238 (25 bp)
GTGTTCGATGTTCCAGCAACCAAAT
LOC_Os08g42310
Os.54053.1.S1_at--654--7871Chr08:26579253..26579277 (25 bp)
GGTTAACCTGCTATGACAGCCATGA
LOC_Os08g42310
Os.54053.1.S1_at--259--6971Chr08:26579296..26579320 (25 bp)
GTAGCTAGCACTTCTCATTATCTTT
LOC_Os08g42310
Os.54053.1.S1_at--449--151Chr08:26579312..26579336 (25 bp)
ATTATCTTTTTTGCCTACTCTTCTT
LOC_Os08g42310
Os.54053.1.S1_at--640--7591Chr08:26579340..26579364 (25 bp)
GGGCATGCATTGTCCCTATGATTAC
LOC_Os08g42310
Os.54053.1.S1_at--287--731Chr08:26579357..26579381 (25 bp)
ATGATTACCTGTGATTCGTCTCTGC
LOC_Os08g42310
Os.54053.1.S1_at--83--10811Chr08:26579436..26579460 (25 bp)
TTGTTTGCTGTGCTGGTTCGTTAAA
LOC_Os08g42310
Os.54053.1.S1_at--467--5671Chr08:26579488..26579512 (25 bp)
GACATACCAGGCTTCATTTAGAGTG
LOC_Os08g42310
Os.54053.1.S1_at--209--6131Chr08:26579508..26579532 (25 bp)
GAGTGTGTAGTCTCCAACTGTAATA
LOC_Os08g42310
Os.54053.1.S1_at--26--1011Chr08:26579580..26579604 (25 bp)
AGGATACATTCCTCAGTTCCATGGG
LOC_Os08g42310
Target Sequence 
AGGATGTAATTACTCACCCAGCCACAAAGGGAAGTAGGGGGCAGTTCTGGTGTTCGATGTTCCAGCAACCAAATCACGAT
GGATGTATGGTTAACCTGCTATGACAGCCATGAACTCGTTAATTGGTGTATGTAGCTAGCACTTCTCATTATCTTTTTTG
CCTACTCTTCTTCTTGGGCATGCATTGTCCCTATGATTACCTGTGATTCGTCTCTGCGGATGGCGCATTGAGATTTCAAA
TCTCGGGACGTACAACAGATCTAGTAATAGTTTGTTTGCTGTGCTGGTTCGTTAAACATATACTGGAGCTCCCAGAATCA
CTGGACATACCAGGCTTCATTTAGAGTGTGTAGTCTCCAACTGTAATACTTTCCTGTGGTTAGTGTTGTTTCTCTACATG
ATGATAGCCTGAACAAGGATACATTCCTCAGTTCCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis