Browse Element(s) Details


Os.54053.2.S1_at

Description gb:AK108659.1
DB_XREF= gi:32993868
TID=Os.54053.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E12, full insert sequence.
FL= gb:AK108659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4231011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42259OsAffx.29629.1.S1_at11/118+26551973..26553999hypothetical protein
LOC_Os08g42268Os.8731.2.S1_s_at11/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42268OsAffx.19018.1.S1_x_at1/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42277OsAffx.17472.1.S1_at5/118+26561695..26562126Auxin responsive protein
LOC_Os08g42290Os.52313.1.S1_x_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42290Os.52313.1.S1_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42299OsAffx.29629.1.S1_at11/118+26571876..26573902hypothetical protein
LOC_Os08g42310Os.54053.1.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42310Os.54053.2.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54053.2.S1_at--808--7851Chr08:26578458..26578482 (25 bp)
GGTAGTGTGTAATCTGGAATCCCAT
LOC_Os08g42310
Os.54053.2.S1_at--468--491Chr08:26578469..26578493 (25 bp)
ATCTGGAATCCCATTCTGATTTGAA
LOC_Os08g42310
Os.54053.2.S1_at--317--6511Chr08:26578486..26578510 (25 bp)
GATTTGAAATTGCTTGCCACCTTTG
LOC_Os08g42310
Os.54053.2.S1_at--1015--4911Chr08:26578497..26578521 (25 bp)
GCTTGCCACCTTTGGAAGAATGATT
LOC_Os08g42310
Os.54053.2.S1_at--542--9751Chr08:26578547..26578571 (25 bp)
TAATTATCAGTTCTCGTTTGCTTGC
LOC_Os08g42310
Os.54053.2.S1_at--468--9071Chr08:26578565..26578589 (25 bp)
TGCTTGCTAGCAACTATTATTTGGA
LOC_Os08g42310
Os.54053.2.S1_at--541--3451Chr08:26578626..26578650 (25 bp)
CAGTACATTACTTATAGGGCACACA
LOC_Os08g42310
Os.54053.2.S1_at--972--1071Chr08:26578641..26578665 (25 bp)
AGGGCACACATGCTTGTAGCTATTA
LOC_Os08g42310
Os.54053.2.S1_at--302--7611Chr08:26578682..26578706 (25 bp)
GGGCACAGATAGATGTAATGCACTA
LOC_Os08g42310
Os.54053.2.S1_at--478--9031Chr08:26578700..26578724 (25 bp)
TGCACTATTTGTATATCTGTGTAAT
LOC_Os08g42310
Os.54053.2.S1_at--589--7951Chr08:26578725..26578749 (25 bp)
GGATAATCCTATTCTTAATTTCAAA
LOC_Os08g42310
Target Sequence 
GGTAGTGTGTAATCTGGAATCCCATTCTGATTTGAAATTGCTTGCCACCTTTGGAAGAATGATTTTTTTTGTACAATTTT
GTGTTTCTTTAATTATCAGTTCTCGTTTGCTTGCTAGCAACTATTATTTGGAGAGCTTGTCAATGAAATGTTAAATAGGT
ATAAATTGCAGTACATTACTTATAGGGCACACATGCTTGTAGCTATTAGTGATAGCATATTATGGGGCACAGATAGATGT
AATGCACTATTTGTATATCTGTGTAATGGATAATCCTATTCTTAATTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54053.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis